Non-Coding RNA Search

Ss1.1-Mixn-0032g13.5

Sequence:


               
               AGCGGACTGGGGAGGCGGCGGCCTGGCTCGGCCTGGCCTGGCCTGTCAGGGCGCGGGCGG
CGGCGGCTCCGGCTCCGGCTCCGGCACCATGTCCCTGCAGTACGGGGCAGAGGAGACGCC
CCTCGCCGGCAGTTACGGCGCGGCGGACTCGTTCCCAAAGGACTTCGGCTACGGCGTGGA
GGAGGAGGAAGAGGAGGCTGCAGCCGGGGGTGGCGGGGTTGGGGCGGGGGCCGGTGGAGG
CTGTGGCCCGGGGGGTGCTGACAGCTCCAAGCCGAGGATTCTGCTCATGGGGCTCCGGCG
CAGCGGCAAGTCTTCCATCCAGAAGGTGGTGTTTCATAAAATGTCGCCCAATGAGACCCT
CTTTTTGGAAAGTACCAACAAGATTTACAAAGATGACATTTCTAATAGCTCCTTTGTGAA
TTTCCAAATATGGGATTTTCCTGGGCAAATGGACTTTTTTGACCCAACTTTTGACTATGA
GATGATCTTCAGGGGAACAGGAGCATTGATATATGTCATTGATGCACAGGATGACTACAT
GGAGGCTTTAACAAGACTTCACATTACTGTTTCTAAAGCCTACAAAGTTAATCCAGACAT
GAATTTTGAGGTTTTTATTCACAAAGTTGATGGTCTGTCTGATGATCACAAAATAGAAAC
ACAGAGGGATATTCATCAAAGGGCCAATGATGACCTTGCAGATGCTGGGCTAGAAAAACT
CCACCTTAGCTTTTATTTGACTAGTATCTATGACCATTCAATATTTGAAGCCTTCAGTAA
GGTGGTGCAGAAACTTATTCCACAACTGCCAACCCTGGAAAACCTATTAAATATCTTTAT
ATCAAATTCAGGTATTGAAAAAGCTTTTCTCTTCGATGTTGTCAGCAAAATCTACATTGC
AACCGACAGTTCTCCTGTGGATATGCAGTCTTATGAACTTTGCTGTGACATGATTGATGT
TGTAATTGATGTGTCTTGTATATATGGGTTAAAGGAAGATGGAAGTGGAAGTGCTTATGA
CAAAGAATCTATGGCCATCATCAAGCTGAATAATACAACTGTTCTTTATTTAAAGGAGGT
GACTAAATTTTTGGCACTGGTCTGCATTCTTAGGGAAGAAAGTTTTGAACGAAAAGGTTT
AATAGACTACAACTTCCACTGTTTCCGTAAAGCTATTCATGAGGTTTTTGAGGTTGGTGT
GACTTCTCACAGGAGCTGTGGTCACCAGAGCAGTGCCCCCAGCCTGAAAGCGTTGACACA
CAACGGCACGCCGCGAAATGCCATCTAGCCTGAATGCCAGCGGTCAGGGCTCCGTGCTGG
CTTATTCTTCACTCCAGGGTCAGAGGCCATGTGCTACAGGACATGGAAGTTGCCGCTTGT
GGGAATCTGGTGCCTGTCCCACTAGAGACAAGGGGTAGAGTTTCTCATTCGGATGAAAAC
TCCTTCAACCAGTGGTGTGCAACTGAAGATACTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGACTGGGGAGGCGGCGGCCTGGCTCGGCCTGGCCTGGCCTGTCAGGGCGCGGGCGG
CGGCGGCTCCGGCTCCGGCTCCGGCACCATGTCCCTGCAGTACGGGGCAGAGGAGACGCC
CCTCGCCGGCAGTTACGGCGCGGCGGACTCGTTCCCAAAGGACTTCGGCTACGGCGTGGA
GGAGGAGGAAGAGGAGGCTGCAGCCGGGGGTGGCGGGGTTGGGGCGGGGGCCGGTGGAGG
CTGTGGCCCGGGGGGTGCTGACAGCTCCAAGCCGAGGATTCTGCTCATGGGGCTCCGGCG
CAGCGGCAAGTCTTCCATCCAGAAGGTGGTGTTTCATAAAATGTCGCCCAATGAGACCCT
CTTTTTGGAAAGTACCAACAAGATTTACAAAGATGACATTTCTAATAGCTCCTTTGTGAA
TTTCCAAATATGGGATTTTCCTGGGCAAATGGACTTTTTTGACCCAACTTTTGACTATGA
GATGATCTTCAGGGGAACAGGAGCATTGATATATGTCATTGATGCACAGGATGACTACAT
GGAGGCTTTAACAAGACTTCACATTACTGTTTCTAAAGCCTACAAAGTTAATCCAGACAT
GAATTTTGAGGTTTTTATTCACAAAGTTGATGGTCTGTCTGATGATCACAAAATAGAAAC
ACAGAGGGATATTCATCAAAGGGCCAATGATGACCTTGCAGATGCTGGGCTAGAAAAACT
CCACCTTAGCTTTTATTTGACTAGTATCTATGACCATTCAATATTTGAAGCCTTCAGTAA
GGTGGTGCAGAAACTTATTCCACAACTGCCAACCCTGGAAAACCTATTAAATATCTTTAT
ATCAAATTCAGGTATTGAAAAAGCTTTTCTCTTCGATGTTGTCAGCAAAATCTACATTGC
AACCGACAGTTCTCCTGTGGATATGCAGTCTTATGAACTTTGCTGTGACATGATTGATGT
TGTAATTGATGTGTCTTGTATATATGGGTTAAAGGAAGATGGAAGTGGAAGTGCTTATGA
CAAAGAATCTATGGCCATCATCAAGCTGAATAATACAACTGTTCTTTATTTAAAGGAGGT
GACTAAATTTTTGGCACTGGTCTGCATTCTTAGGGAAGAAAGTTTTGAACGAAAAGGTTT
AATAGACTACAACTTCCACTGTTTCCGTAAAGCTATTCATGAGGTTTTTGAGGTTGGTGT
GACTTCTCACAGGAGCTGTGGTCACCAGAGCAGTGCCCCCAGCCTGAAAGCGTTGACACA
CAACGGCACGCCGCGAAATGCCATCTAGCCTGAATGCCAGCGGTCAGGGCTCCGTGCTGG
CTTATTCTTCACTCCAGGGTCAGAGGCCATGTGCTACAGGACATGGAAGTTGCCGCTTGT
GGGAATCTGGTGCCTGTCCCACTAGAGACAAGGGGTAGAGTTTCTCATTCGGATGAAAAC
TCCTTCAACCAGTGGTGTGCAACTGAAGATACTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9HB90_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9HB90_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-275, - strand, RNAz p=0.757318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-275, - strand, RNAz p=0.757318

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-391, gnl|bosTau2|chr23 (20546289-20545917)
               

               
               15-391, gnl|Hg17|chr1 (38994489-38991790)
               

               
               15-391, gnl|Mm7|chr4 (123362108-123364545)
               


               
               638-1473, gnl|bosTau2|chr23 (20544797-20543963)
               

               
               638-1473, gnl|Hg17|chr1 (38990476-38974134)
               

               
               638-1473, gnl|Mm7|chr4 (123365793-123380507)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-391, gnl|bosTau2|chr23 (20546289-20545917)
               

               
               15-391, gnl|Hg17|chr1 (38994489-38991790)
               

               
               15-391, gnl|Mm7|chr4 (123362108-123364545)
               


               
               638-1473, gnl|bosTau2|chr23 (20544797-20543963)
               

               
               638-1473, gnl|Hg17|chr1 (38990476-38974134)
               

               
               638-1473, gnl|Mm7|chr4 (123365793-123380507)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tes (0.207814)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	15-391, gnl\|bosTau2\|chr23 (20546289-20545917)
	15-391, gnl\|Hg17\|chr1 (38994489-38991790)
	15-391, gnl\|Mm7\|chr4 (123362108-123364545)

	638-1473, gnl\|bosTau2\|chr23 (20544797-20543963)
	638-1473, gnl\|Hg17\|chr1 (38990476-38974134)
	638-1473, gnl\|Mm7\|chr4 (123365793-123380507)

	tes (0.207814)
	nje (0.16592)
	cje (0.165235)
	fco (0.157208)
	liv (0.146284)
	nmm (0.132802)
	clu (0.119646)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)