Ss1.1-Mixn-0032i02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAACAGTTAAGGCACCAGCCACTCCACGCGGAGCACCAGTTCCCTCTTGCCTGAAGA TGTTCCACCAGATTTGGGCAGCTCTACTCTACCTCTATGGCATTCTCCTTAACTCCATCT ACCAGTGCCCTGAGCACAGTCAACTGACAACTGGAGGAGTGGATGGGAAAGAGTTCCCAG AGCCCCACCTGGGCCAGTGGTACTTTATCGCAGGGGCAGCTCCAACCAAGGAGGAGTTGG CGACTTTTGACCCTGTGGACAACATTGTCTTCAACATGGCTGCAGGCTCTGTTCCCATGC AGCTCCAGCTTCGAGCTACCATCCGCACGAAAAATGGGCTCTGTGTGCCCCGGAAATGGA TCTACCGCCTGTCTGAGGGAAACACAGATCTCAGAACAGAAGGCCGCCCTGACATGAAGA CCAAGCTCTTCTCTAGCACATGCCCAGGTGGAATCATGCTGAAAGAGACAGGCCAGGGTT ACCAGCGCTTCCTCCTCTACAATCGCTCACCACACCCTCCTGAGAAGTGTGTGGAGGAGT TCCAGTCCCTGACCTCCTGCCTGGACTTTAAGGCCTTCTTACTGACTCCCAGGAATCAAG AGGCCTGCGAGCTGTCTAGTAACTGACCAATGGCTTCATCTGTGCTCCCAGATGGATACA GTGGAAGCTGAGATTGTGGGGTCGGGGGGAAAAGCTGGAGAATCCCAAATCCCTTACAAG AGTAATAAAGATGATTTTTCAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAACAGTTAAGGCACCAGCCACTCCACGCGGAGCACCAGTTCCCTCTTGCCTGAAGA TGTTCCACCAGATTTGGGCAGCTCTACTCTACCTCTATGGCATTCTCCTTAACTCCATCT ACCAGTGCCCTGAGCACAGTCAACTGACAACTGGAGGAGTGGATGGGAAAGAGTTCCCAG AGCCCCACCTGGGCCAGTGGTACTTTATCGCAGGGGCAGCTCCAACCAAGGAGGAGTTGG CGACTTTTGACCCTGTGGACAACATTGTCTTCAACATGGCTGCAGGCTCTGTTCCCATGC AGCTCCAGCTTCGAGCTACCATCCGCACGAAAAATGGGCTCTGTGTGCCCCGGAAATGGA TCTACCGCCTGTCTGAGGGAAACACAGATCTCAGAACAGAAGGCCGCCCTGACATGAAGA CCAAGCTCTTCTCTAGCACATGCCCAGGTGGAATCATGCTGAAAGAGACAGGCCAGGGTT ACCAGCGCTTCCTCCTCTACAATCGCTCACCACACCCTCCTGAGAAGTGTGTGGAGGAGT TCCAGTCCCTGACCTCCTGCCTGGACTTTAAGGCCTTCTTACTGACTCCCAGGAATCAAG AGGCCTGCGAGCTGTCTAGTAACTGACCAATGGCTTCATCTGTGCTCCCAGATGGATACA GTGGAAGCTGAGATTGTGGGGTCGGGGGGAAAAGCTGGAGAATCCCAAATCCCTTACAAG AGTAATAAAGATGATTTTTCAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-117, + strand, RNAz p=0.999069 | |
| 4-113, - strand, RNAz p=0.664883 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, + strand, RNAz p=0.999069 | |
| 4-113, - strand, RNAz p=0.664883 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC020683, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-173, gnl|bosTau2|chr23 (23316899-23317071) | |
| 1-173, gnl|canFam2|chr12 (4143354-4143640) | |
| 1-173, gnl|dasNov1|scaffold_15034 (12694-12957) | |
| 1-173, gnl|echTel1|scaffold_301888 (30285-29999) | |
| 1-173, gnl|hg17|chr6 (31731534-31731804) | |
| 1-173, gnl|Hg17|chr6 (31731674-31731836) | |
| 1-173, gnl|mm7|chr17 (33229069-33228793) | |
| 1-173, gnl|Mm7|chr17 (33228926-33228759) | |
| 1-173, gnl|monDom2|scaffold_42 (17810355-17810088) | |
| 1-173, gnl|oryCun1|scaffold_198577 (22326-22597) | |
| 1-173, gnl|panTro1|chr5 (32130851-32131121) | |
| 1-173, gnl|rheMac2|chr4 (31299810-31300078) | |
| 1-173, gnl|rn3|chr20 (3754712-3754990) | |
| 494-600, gnl|bosTau2|chr23 (23318346-23318453) | |
| 494-600, gnl|canFam2|chr12 (4144666-4145044) | |
| 494-600, gnl|echTel1|scaffold_301888 (28879-28553) | |
| 494-600, gnl|hg17|chr6 (31733142-31733495) | |
| 494-600, gnl|Hg17|chr6 (31733367-31733479) | |
| 494-600, gnl|loxAfr1|scaffold_24380 (38350-38723) | |
| 494-600, gnl|mm7|chr17 (33227651-33227218) | |
| 494-600, gnl|Mm7|chr17 (33227336-33227229) | |
| 494-600, gnl|monDom2|scaffold_42 (17808729-17808314) | |
| 494-600, gnl|oryCun1|scaffold_198577 (23607-23989) | |
| 494-600, gnl|panTro1|chr5 (32132457-32132810) | |
| 494-600, gnl|rheMac2|chr4 (31301434-31301787) | |
| 494-600, gnl|rn3|chr20 (3756098-3756490) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-173, gnl|bosTau2|chr23 (23316899-23317071) | |
| 1-173, gnl|canFam2|chr12 (4143354-4143640) | |
| 1-173, gnl|dasNov1|scaffold_15034 (12694-12957) | |
| 1-173, gnl|echTel1|scaffold_301888 (30285-29999) | |
| 1-173, gnl|hg17|chr6 (31731534-31731804) | |
| 1-173, gnl|Hg17|chr6 (31731674-31731836) | |
| 1-173, gnl|mm7|chr17 (33229069-33228793) | |
| 1-173, gnl|Mm7|chr17 (33228926-33228759) | |
| 1-173, gnl|monDom2|scaffold_42 (17810355-17810088) | |
| 1-173, gnl|oryCun1|scaffold_198577 (22326-22597) | |
| 1-173, gnl|panTro1|chr5 (32130851-32131121) | |
| 1-173, gnl|rheMac2|chr4 (31299810-31300078) | |
| 1-173, gnl|rn3|chr20 (3754712-3754990) | |
| 494-600, gnl|bosTau2|chr23 (23318346-23318453) | |
| 494-600, gnl|canFam2|chr12 (4144666-4145044) | |
| 494-600, gnl|echTel1|scaffold_301888 (28879-28553) | |
| 494-600, gnl|hg17|chr6 (31733142-31733495) | |
| 494-600, gnl|Hg17|chr6 (31733367-31733479) | |
| 494-600, gnl|loxAfr1|scaffold_24380 (38350-38723) | |
| 494-600, gnl|mm7|chr17 (33227651-33227218) | |
| 494-600, gnl|Mm7|chr17 (33227336-33227229) | |
| 494-600, gnl|monDom2|scaffold_42 (17808729-17808314) | |
| 494-600, gnl|oryCun1|scaffold_198577 (23607-23989) | |
| 494-600, gnl|panTro1|chr5 (32132457-32132810) | |
| 494-600, gnl|rheMac2|chr4 (31301434-31301787) | |
| 494-600, gnl|rn3|chr20 (3756098-3756490) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cli (0.611247) | |
| fli (0.608643) | |
| eli (0.303628) | |
| eje (0.197668) | |
| pla (0.133672) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) | |
| fli (0.608643) | |
| eli (0.303628) | |
| eje (0.197668) | |
| pla (0.133672) |