Non-Coding RNA Search

Ss1.1-Mixn-0032l13.5

Sequence:


               
               CGGAGCCATCAGCGGTGCTGGTAGTCCGTGGCGTGCGGGACCGGCTGGTCATCACCTACC
CGCACGAGTACCACACCCTCAAGTCCAGCCGCTTCTACCTGCTACTACTGGGTGTGGGAG
ACCCAAGTGGACCCAGTGCCAATGGCTCGGCTGACTCGCAGGGCCTGCTCTTCTTCCGGC
AGGACCAGGCCCACATAGACTTGTTTGTCTTCTTCTCCGTCTTCTTTTCCTGCTTCTTCC
TCTTCCTCTCACTCTGCGTGCTCCTCTGGAAGGCCAAGCAGGCCCTGGACCAGCGGCAGG
AGCAGCGCCGGCACCTGCAAGAGATGACCAAGATGGCCAGCCGCCCTTTCGCCAAGGTCA
CGGTCTGCTTCCCACCTGACCCTACTGCCCCAGCCCTCGCCTGGAAGCCGGCCGGGCTCC
CGCCACCCACCTTCCGCCGCTCTGAGCCCTTCTTGGCCCCCCTGCTGCTGACAGGGGCCG
GCGGGCCCTGGGGGCCTGTGGGAGGGGGATGCTGCCCACCGGCCATCCCCGCCACCACTG
CTGGCCTGCGAGCTGGGCCTATCACCCTGGAGCCCACTGAAGATGGCATGGCTGGTGTGG
CCACACTGTTGCTCCAGCTGCCTGGCGGGCCCCATGCTCCCAACGGCGCCTGCCTGGGGT
CAGCCCTCGTCACGCTGCGGCACAGGCTGCACGAGTACTGTGGGGGTGGCGGCGGTGCTG
GGGGCAGTGGGCACGGGGCTGGTGCAGGCCGGAAGGGACTGTTGAGCCAGGACAACCTCA
CCAGCATGTCCCTCTGACCCGTGGCGGGATCCTCAGCCACAGCAGTTGAGACCACCCCGG
ACTTGGATCCCTCTACCTGGGACACTGTGTCCTCAGAGACTTTGGTTTCCTTCCTCTGAT
GGGGGGAGAGGGGTCCCCAGACAGGGCCTTCTTTGATCTGCATTCAACAATTATTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGCCATCAGCGGTGCTGGTAGTCCGTGGCGTGCGGGACCGGCTGGTCATCACCTACC
CGCACGAGTACCACACCCTCAAGTCCAGCCGCTTCTACCTGCTACTACTGGGTGTGGGAG
ACCCAAGTGGACCCAGTGCCAATGGCTCGGCTGACTCGCAGGGCCTGCTCTTCTTCCGGC
AGGACCAGGCCCACATAGACTTGTTTGTCTTCTTCTCCGTCTTCTTTTCCTGCTTCTTCC
TCTTCCTCTCACTCTGCGTGCTCCTCTGGAAGGCCAAGCAGGCCCTGGACCAGCGGCAGG
AGCAGCGCCGGCACCTGCAAGAGATGACCAAGATGGCCAGCCGCCCTTTCGCCAAGGTCA
CGGTCTGCTTCCCACCTGACCCTACTGCCCCAGCCCTCGCCTGGAAGCCGGCCGGGCTCC
CGCCACCCACCTTCCGCCGCTCTGAGCCCTTCTTGGCCCCCCTGCTGCTGACAGGGGCCG
GCGGGCCCTGGGGGCCTGTGGGAGGGGGATGCTGCCCACCGGCCATCCCCGCCACCACTG
CTGGCCTGCGAGCTGGGCCTATCACCCTGGAGCCCACTGAAGATGGCATGGCTGGTGTGG
CCACACTGTTGCTCCAGCTGCCTGGCGGGCCCCATGCTCCCAACGGCGCCTGCCTGGGGT
CAGCCCTCGTCACGCTGCGGCACAGGCTGCACGAGTACTGTGGGGGTGGCGGCGGTGCTG
GGGGCAGTGGGCACGGGGCTGGTGCAGGCCGGAAGGGACTGTTGAGCCAGGACAACCTCA
CCAGCATGTCCCTCTGACCCGTGGCGGGATCCTCAGCCACAGCAGTTGAGACCACCCCGG
ACTTGGATCCCTCTACCTGGGACACTGTGTCCTCAGAGACTTTGGTTTCCTTCCTCTGAT
GGGGGGAGAGGGGTCCCCAGACAGGGCCTTCTTTGATCTGCATTCAACAATTATTTATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21410473|gb|AAH31185.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21410473|gb|AAH31185.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               359-478, - strand, RNAz p=0.790065
               

               
               799-960, - strand, RNAz p=0.99972

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, - strand, RNAz p=0.790065
               

               
               799-960, - strand, RNAz p=0.99972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               321-960, gnl|bosTau2|chr18 (45064268-45064917)
               

               
               321-960, gnl|Hg17|chr19 (47572291-47572941)
               

               
               321-960, gnl|Mm7|chr7 (22153289-22153906)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               321-960, gnl|bosTau2|chr18 (45064268-45064917)
               

               
               321-960, gnl|Hg17|chr19 (47572291-47572941)
               

               
               321-960, gnl|Mm7|chr7 (22153289-22153906)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

	359-478, - strand, RNAz p=0.790065
	799-960, - strand, RNAz p=0.99972

	321-960, gnl\|bosTau2\|chr18 (45064268-45064917)
	321-960, gnl\|Hg17\|chr19 (47572291-47572941)
	321-960, gnl\|Mm7\|chr7 (22153289-22153906)