Non-Coding RNA Search

Ss1.1-Mixn-0032m17.5

Sequence:


               
               AAGAAGCTCTGCCCTCAGTGCAACACCATCACAGCGCCCGGAGACCTGCGGAGAATCTAC
TTGTGAGCTGGCCACCCAGGCAGGCCCTGCCTCCGGCGCCCCACCTGCCCCGCCTGTGAC
GTGACCCCCCTTGTACATACGCGCACACAGGCTCCCCGTGTACATACATGCACGCACACA
CATGCACACACACAGGACTCTGGAGCCAGAGTGGAGGCTGAGGCGCAGGCCCCGCCTGCT
GGCTCCCACCAAGATTGGGAACCATACCTGTTCCAGGTTCTGTTCCCAGGGCGGAGCAGG
GAGGCGGGGCGGAGGGCGCAGCCGGGCAAGGCTCCTGAGATCCAGCCCCCAGACGGACAG
ATGGACGGACAGACATGCAAACACCAGACTGAAGCACATGTAATATAGACCGTGTATGTT
TACAATGTTGTGTATAAATGGGACGACTCCTCGCCCTCTACCCCGTCCCCGCCCCTTTGG
TTGTATGATTTTCTTCTTTTGTTAAGATCACCTGGGAGCAGTGCCTCCTCCGGGCTGGCT
GGGGGCTCGGCCCATCCACCTCTTGAGGCGCCTGCCTCCCCTCCCCCTCCCGTGGTGTCC
CCTCCCTCTCCCATGTGCTCGGTGTTCAGTGGTGTATATTTCTTCTCCCAGACGTGGGGC
ACGTGCCCCCAGGGACATGATCCTCTCCTTAGTCTTAGCTCCTGGGGCTCTTCGTAAGGA
GTTGGGGGAGGGGGGAGGCACAGGAAGGGGAGCCGAGCTGAAGCGGGGGCTGAGACTGGG
ACTGGATGAGGGTGCTCCTGGCTGCCCAGCCTTCTGCCGCCGAGAACCTTTCCTGGGATT
AGAGCTGCTGTTCCCAGGGCGGAGTGTGGTTTCCCCTGCCCTTCCCGTGGGCCCCATGGT
GTGATGCTGTGTCTGTATATTCTATACAAAGGTACTTGTCCTTTCCCTTTGTAAACTACA
TTTGACATGGATTAAACCAGTATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGCTCTGCCCTCAGTGCAACACCATCACAGCGCCCGGAGACCTGCGGAGAATCTAC
TTGTGAGCTGGCCACCCAGGCAGGCCCTGCCTCCGGCGCCCCACCTGCCCCGCCTGTGAC
GTGACCCCCCTTGTACATACGCGCACACAGGCTCCCCGTGTACATACATGCACGCACACA
CATGCACACACACAGGACTCTGGAGCCAGAGTGGAGGCTGAGGCGCAGGCCCCGCCTGCT
GGCTCCCACCAAGATTGGGAACCATACCTGTTCCAGGTTCTGTTCCCAGGGCGGAGCAGG
GAGGCGGGGCGGAGGGCGCAGCCGGGCAAGGCTCCTGAGATCCAGCCCCCAGACGGACAG
ATGGACGGACAGACATGCAAACACCAGACTGAAGCACATGTAATATAGACCGTGTATGTT
TACAATGTTGTGTATAAATGGGACGACTCCTCGCCCTCTACCCCGTCCCCGCCCCTTTGG
TTGTATGATTTTCTTCTTTTGTTAAGATCACCTGGGAGCAGTGCCTCCTCCGGGCTGGCT
GGGGGCTCGGCCCATCCACCTCTTGAGGCGCCTGCCTCCCCTCCCCCTCCCGTGGTGTCC
CCTCCCTCTCCCATGTGCTCGGTGTTCAGTGGTGTATATTTCTTCTCCCAGACGTGGGGC
ACGTGCCCCCAGGGACATGATCCTCTCCTTAGTCTTAGCTCCTGGGGCTCTTCGTAAGGA
GTTGGGGGAGGGGGGAGGCACAGGAAGGGGAGCCGAGCTGAAGCGGGGGCTGAGACTGGG
ACTGGATGAGGGTGCTCCTGGCTGCCCAGCCTTCTGCCGCCGAGAACCTTTCCTGGGATT
AGAGCTGCTGTTCCCAGGGCGGAGTGTGGTTTCCCCTGCCCTTCCCGTGGGCCCCATGGT
GTGATGCTGTGTCTGTATATTCTATACAAAGGTACTTGTCCTTTCCCTTTGTAAACTACA
TTTGACATGGATTAAACCAGTATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9BWG1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9BWG1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-361, - strand, RNAz p=0.999622
               

               
               761-876, - strand, RNAz p=0.7671

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-361, - strand, RNAz p=0.999622
               

               
               761-876, - strand, RNAz p=0.7671

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               257-350, + strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               257-350, + strand, RNAmicro p=1

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               195-161, BW976458 full-length enriched swine cDNA library, adult intestine 
(dbj|BW976458.1|), blast E-value=1e-37, identity=100% 
               

               
               195-161, DB787163 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB787163.1|), blast E-value=1e-37, identity=100% 
               

               
               195-361, DB816811 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816811.1|), blast E-value=0, identity=99.4% 
               

               
               195-309, LB03011.CR_L22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV927844.1|), 
blast E-value=7e-33, identity=91.3% 
               

               
               195-309, 000227BSPB001309HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY138326.1|), blast E-value=7e-33, identity=91.3% 
               

               
               195-309, LB03056.CR_G22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375204.1|), 
blast E-value=7e-33, identity=91.3%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               195-161, BW976458 full-length enriched swine cDNA library, adult intestine 
(dbj|BW976458.1|), blast E-value=1e-37, identity=100% 
               

               
               195-161, DB787163 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB787163.1|), blast E-value=1e-37, identity=100% 
               

               
               195-361, DB816811 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816811.1|), blast E-value=0, identity=99.4% 
               

               
               195-309, LB03011.CR_L22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV927844.1|), 
blast E-value=7e-33, identity=91.3% 
               

               
               195-309, 000227BSPB001309HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY138326.1|), blast E-value=7e-33, identity=91.3% 
               

               
               195-309, LB03056.CR_G22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375204.1|), 
blast E-value=7e-33, identity=91.3%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-988, gnl|bosTau2|chr3 (70531928-70530958)
               

               
               1-988, gnl|Hg17|chr1 (44785475-44786485)
               

               
               1-988, gnl|Mm7|chr4 (116648808-116647903)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-988, gnl|bosTau2|chr3 (70531928-70530958)
               

               
               1-988, gnl|Hg17|chr1 (44785475-44786485)
               

               
               1-988, gnl|Mm7|chr4 (116648808-116647903)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	79-361, - strand, RNAz p=0.999622
	761-876, - strand, RNAz p=0.7671

	195-161, BW976458 full-length enriched swine cDNA library, adult intestine (dbj\|BW976458.1\|), blast E-value=1e-37, identity=100%
	195-161, DB787163 full-length enriched swine cDNA library, adult adrenal (dbj\|DB787163.1\|), blast E-value=1e-37, identity=100%
	195-361, DB816811 full-length enriched swine cDNA library, adult spleen Sus (dbj\|DB816811.1\|), blast E-value=0, identity=99.4%
	195-309, LB03011.CR_L22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV927844.1\|), blast E-value=7e-33, identity=91.3%
	195-309, 000227BSPB001309HT BSPB Bos taurus cDNA, mRNA sequence (gb\|DY138326.1\|), blast E-value=7e-33, identity=91.3%
	195-309, LB03056.CR_G22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE375204.1\|), blast E-value=7e-33, identity=91.3%

	1-988, gnl\|bosTau2\|chr3 (70531928-70530958)
	1-988, gnl\|Hg17\|chr1 (44785475-44786485)
	1-988, gnl\|Mm7\|chr4 (116648808-116647903)

	fty (0.17584)
	ill (0.175593)
	fhi (0.169578)
	cli (0.152812)
	hyp (0.142837)
	ssp (0.13552)
	ute (0.132784)
	cly (0.120642)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)