Ss1.1-Mixn-0032m24.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGTGGGAGGGGCTGCGGCAGGCTCCTCCACAGGTGTCATGGCCCTCCGATTCCTCCT GGGCTTTTTGCTTGCTGGTGTTGACCTCGGTGTCTACCTGATGCGCCTGGAGCTGTGCGA TCCAACCCAGAGGCTTCGGGTGGCCCTGGCAGGGGAGTTGGTGGGGGTAGGGGGGCACTT CCTGTTCCTGGGCCTGGCCCTTGTCTCTAAGGACTGGCGATTTCTGCAACGAATGATCAC CGCTCCCTGCATCCTCTTCCTGTTTTATGGCTGGCCTGGTCTGTTTCTGGAGTCTGCACG GTGGCTGATAGTGAAGCGACAGATTGAGGAGGCCCAATCTGTGCTAAGGATCTTGGCTGA GCGGAACCGGCCTCATGGGCAGATGCTGGGCGAGGAGGCCCAGGAGGCCTTGCAGGACCT GGAGAACACCTGCCCTCTCCCCACAACATCCTCCTTTTCCTTCGCTTCCCTCCTCAACTA CCGCAACATCTGGAAAAACCTGCTTATCCTGGGCTTCACCAACTTTATTGCCCATGCCAT TCGCCACTGCTACCAGCCTGTGGGAGGAGGAGGAAGCCCGTCCGACTTCTACCTGTGCTC CCTGCTGGCCAGCGGCACAGCGGCCCTGGCCTGCGTCTTCCTGGGGGTCACCGTGGACCG ATTTGGCCGCCGGGGCATCCTGCTTCTCTCAATGACCCTCACTGGCATTGCGTCCCTGGT CCTGCTGGGCCTGTGGGATTATCTGAACGAGGCCGCCATCACCACCTTCTCCGTCCTTGG TCTCTTCTCCTCCCAAGCGGCTGGCATCCTCAGCACCCTCCTTGCTGCTGAAGTCATCCC TACCACCGTCCGGGGCCGAGGCCTGGGCCTGATCATGGCTCTAGGGGCACTTGGTGGGCT GAGTGGCCCAGCCCAGCGCCTCCACATGGGCCATGGAGCCTTCCTGCAGCATGTGGTGCT GGCGGCCTGTGCCCTCCTCTGCATCCTCAGCATCATGCTTCTGCCGGAGACCAAGCGCAA GCTCCTGCCCGAGGTGCTCCGGGATGGGGAGCTGTGCCGCCGGCCCTCCCTGCTGCGGCA GCCACCCCCTAACCGCTGTGACCACGTCCCGCTGCTTGCCACCCCCAACCCCGCCCTCTG AGTGGCCCCTGAGCACCCTGGCAGGAGGCTAGCCCATACAGGAAGGTGGCACAAGGCCCT GGCAAGGAGAGCGGGAGGACTGAGTGAGGAAGGCAGGGCTGTCTGGAAGGCTCAGGCACC TCAGGCCAGCCAGCAAGGAGCTCAGAGGGCTGCCCTCACCCCCATTTCCTCCCTGCTGCT TTGTGTTCACTTCCTTGGCAAGAGTCAGGGGACAGGGAGAGAACGCCACACTGTACCCAC CAGGTCTGGGCTCCATCTTGTGCTCAAAGACATCCTCCCAGACCTCACTCTCTCTCCCTT TATCATCCTGTTTCAATAAAGACATTTGGAATAAATGAGCATAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGTGGGAGGGGCTGCGGCAGGCTCCTCCACAGGTGTCATGGCCCTCCGATTCCTCCT GGGCTTTTTGCTTGCTGGTGTTGACCTCGGTGTCTACCTGATGCGCCTGGAGCTGTGCGA TCCAACCCAGAGGCTTCGGGTGGCCCTGGCAGGGGAGTTGGTGGGGGTAGGGGGGCACTT CCTGTTCCTGGGCCTGGCCCTTGTCTCTAAGGACTGGCGATTTCTGCAACGAATGATCAC CGCTCCCTGCATCCTCTTCCTGTTTTATGGCTGGCCTGGTCTGTTTCTGGAGTCTGCACG GTGGCTGATAGTGAAGCGACAGATTGAGGAGGCCCAATCTGTGCTAAGGATCTTGGCTGA GCGGAACCGGCCTCATGGGCAGATGCTGGGCGAGGAGGCCCAGGAGGCCTTGCAGGACCT GGAGAACACCTGCCCTCTCCCCACAACATCCTCCTTTTCCTTCGCTTCCCTCCTCAACTA CCGCAACATCTGGAAAAACCTGCTTATCCTGGGCTTCACCAACTTTATTGCCCATGCCAT TCGCCACTGCTACCAGCCTGTGGGAGGAGGAGGAAGCCCGTCCGACTTCTACCTGTGCTC CCTGCTGGCCAGCGGCACAGCGGCCCTGGCCTGCGTCTTCCTGGGGGTCACCGTGGACCG ATTTGGCCGCCGGGGCATCCTGCTTCTCTCAATGACCCTCACTGGCATTGCGTCCCTGGT CCTGCTGGGCCTGTGGGATTATCTGAACGAGGCCGCCATCACCACCTTCTCCGTCCTTGG TCTCTTCTCCTCCCAAGCGGCTGGCATCCTCAGCACCCTCCTTGCTGCTGAAGTCATCCC TACCACCGTCCGGGGCCGAGGCCTGGGCCTGATCATGGCTCTAGGGGCACTTGGTGGGCT GAGTGGCCCAGCCCAGCGCCTCCACATGGGCCATGGAGCCTTCCTGCAGCATGTGGTGCT GGCGGCCTGTGCCCTCCTCTGCATCCTCAGCATCATGCTTCTGCCGGAGACCAAGCGCAA GCTCCTGCCCGAGGTGCTCCGGGATGGGGAGCTGTGCCGCCGGCCCTCCCTGCTGCGGCA GCCACCCCCTAACCGCTGTGACCACGTCCCGCTGCTTGCCACCCCCAACCCCGCCCTCTG AGTGGCCCCTGAGCACCCTGGCAGGAGGCTAGCCCATACAGGAAGGTGGCACAAGGCCCT GGCAAGGAGAGCGGGAGGACTGAGTGAGGAAGGCAGGGCTGTCTGGAAGGCTCAGGCACC TCAGGCCAGCCAGCAAGGAGCTCAGAGGGCTGCCCTCACCCCCATTTCCTCCCTGCTGCT TTGTGTTCACTTCCTTGGCAAGAGTCAGGGGACAGGGAGAGAACGCCACACTGTACCCAC CAGGTCTGGGCTCCATCTTGTGCTCAAAGACATCCTCCCAGACCTCACTCTCTCTCCCTT TATCATCCTGTTTCAATAAAGACATTTGGAATAAATGAGCATAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 852-1010, - strand, RNAz p=0.939661 | |
| 1326-1483, - strand, RNAz p=0.988321 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 852-1010, - strand, RNAz p=0.939661 | |
| 1326-1483, - strand, RNAz p=0.988321 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-105, gnl|bosTau2|chr10 (13778792-13778896) | |
| 1-105, gnl|canFam2|chr8 (6600404-6600811) | |
| 1-105, gnl|echTel1|scaffold_322757 (85111-84731) | |
| 1-105, gnl|hg17|chr14 (22888123-22888496) | |
| 1-105, gnl|Hg17|chr14 (22888424-22888320) | |
| 1-105, gnl|mm7|chr14 (49776417-49776779) | |
| 1-105, gnl|Mm7|chr14 (49776707-49776603) | |
| 1-105, gnl|monDom2|scaffold_12 (26387598-26387264) | |
| 1-105, gnl|oryCun1|scaffold_82679 (1993-1602) | |
| 1-105, gnl|panTro1|chr15 (21860207-21860580) | |
| 1-105, gnl|rheMac2|chr7 (86188826-86189197) | |
| 1-105, gnl|rn3|chr15 (33027340-33027726) | |
| 107-270, gnl|bosTau2|chr10 (13779473-13779636) | |
| 107-270, gnl|canFam2|chr8 (6599854-6600042) | |
| 107-270, gnl|danRer3|chr24 (32849433-32849610) | |
| 107-270, gnl|echTel1|scaffold_322757 (85619-85430) | |
| 107-270, gnl|fr1|chrUn (223517793-223517969) | |
| 107-270, gnl|hg17|chr14 (22887544-22887732) | |
| 107-270, gnl|Hg17|chr14 (22887718-22887555) | |
| 107-270, gnl|mm7|chr14 (49775745-49775933) | |
| 107-270, gnl|Mm7|chr14 (49775919-49775756) | |
| 107-270, gnl|monDom2|scaffold_12 (26388129-26387941) | |
| 107-270, gnl|oryCun1|scaffold_82679 (2538-2350) | |
| 107-270, gnl|panTro1|chr15 (21859628-21859816) | |
| 107-270, gnl|rheMac2|chr7 (86188247-86188435) | |
| 107-270, gnl|rn3|chr15 (33026578-33026766) | |
| 107-270, gnl|tetNig1|chrUn_random (134268621-134268802) | |
| 520-740, gnl|bosTau2|chr10 (13780332-13780552) | |
| 520-740, gnl|Hg17|chr14 (22886783-22886563) | |
| 520-740, gnl|Mm7|chr14 (49775039-49774819) | |
| 852-1483, gnl|bosTau2|chr10 (13781072-13781707) | |
| 852-1483, gnl|Hg17|chr14 (22885986-22885365) | |
| 852-1483, gnl|Mm7|chr14 (49774293-49773676) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-105, gnl|bosTau2|chr10 (13778792-13778896) | |
| 1-105, gnl|canFam2|chr8 (6600404-6600811) | |
| 1-105, gnl|echTel1|scaffold_322757 (85111-84731) | |
| 1-105, gnl|hg17|chr14 (22888123-22888496) | |
| 1-105, gnl|Hg17|chr14 (22888424-22888320) | |
| 1-105, gnl|mm7|chr14 (49776417-49776779) | |
| 1-105, gnl|Mm7|chr14 (49776707-49776603) | |
| 1-105, gnl|monDom2|scaffold_12 (26387598-26387264) | |
| 1-105, gnl|oryCun1|scaffold_82679 (1993-1602) | |
| 1-105, gnl|panTro1|chr15 (21860207-21860580) | |
| 1-105, gnl|rheMac2|chr7 (86188826-86189197) | |
| 1-105, gnl|rn3|chr15 (33027340-33027726) | |
| 107-270, gnl|bosTau2|chr10 (13779473-13779636) | |
| 107-270, gnl|canFam2|chr8 (6599854-6600042) | |
| 107-270, gnl|danRer3|chr24 (32849433-32849610) | |
| 107-270, gnl|echTel1|scaffold_322757 (85619-85430) | |
| 107-270, gnl|fr1|chrUn (223517793-223517969) | |
| 107-270, gnl|hg17|chr14 (22887544-22887732) | |
| 107-270, gnl|Hg17|chr14 (22887718-22887555) | |
| 107-270, gnl|mm7|chr14 (49775745-49775933) | |
| 107-270, gnl|Mm7|chr14 (49775919-49775756) | |
| 107-270, gnl|monDom2|scaffold_12 (26388129-26387941) | |
| 107-270, gnl|oryCun1|scaffold_82679 (2538-2350) | |
| 107-270, gnl|panTro1|chr15 (21859628-21859816) | |
| 107-270, gnl|rheMac2|chr7 (86188247-86188435) | |
| 107-270, gnl|rn3|chr15 (33026578-33026766) | |
| 107-270, gnl|tetNig1|chrUn_random (134268621-134268802) | |
| 520-740, gnl|bosTau2|chr10 (13780332-13780552) | |
| 520-740, gnl|Hg17|chr14 (22886783-22886563) | |
| 520-740, gnl|Mm7|chr14 (49775039-49774819) | |
| 852-1483, gnl|bosTau2|chr10 (13781072-13781707) | |
| 852-1483, gnl|Hg17|chr14 (22885986-22885365) | |
| 852-1483, gnl|Mm7|chr14 (49774293-49773676) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hyp (0.714184) | |
| fce (0.543183) | |
| fhi (0.508733) | |
| ece (0.45861) | |
| ebs (0.354904) | |
| eep (0.245128) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.714184) | |
| fce (0.543183) | |
| fhi (0.508733) | |
| ece (0.45861) | |
| ebs (0.354904) | |
| eep (0.245128) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jca (0.11396) |