Non-Coding RNA Search

Ss1.1-Mixn-0032o08.5

Sequence:


               
               GCACGACCCGCGCTTCGACACCGAGTACAAATCCCGCGGCTGCAGCAACCAGTACCTGGT
GACGCACAAGCAGAGCCTGGAGGACATGCTGGAGAAGCACCAGACGCTGGAGCGCGACGG
CCGCCTGTGCAAGCGGGAGGTGCAGCTGCGCCTGTCCTACGTCTACGACTGGTCGGCGCC
GCCCTCGCAGTGCTGCCAGCGGAAGGAGGGCATCCCCTGACCGTCGCCTGCAGCCGGCGC
ACGGGCCCAGGAGGGCGGGTTCACCCTTCCTACCGAGCCTGGCGGTGCAGGGGGAGGCCC
GTCCAGAGCCCGGGGTGAGGGCACCGTCCACGGGCGAAGCCGGCAGCTTCCGGCTAGTTG
TTAGCACCACGAGGTCAGCCCCCAAGAGGACTTCGTTTACCTGGTGGCCGTGGGCCCTTC
AGGTGGATGCTGAGCAGCAGCGGACAGCTCCTAAGCCTCGCTCCAGTCGGCGCCCAGTTC
CCCTCAAGAGCCATACATGGCGGCCTGCAGAGGGCTTCTTGTTCCAGGGCTGGGTGGCCC
ATCCTGCAGGCTGCAGCCAGCATCACGTCCAGGCGGAAGTGTCTGGTCCCTGGATTCAGC
ATTCTCCTGGATGGGGGCGGTGGACACCCTGCTGTGGAAGCAGCCCACAGAGACTGTCCA
CTCCTTGTCCCCTCCCCGGTAGGGCTGAGGAACCAGAGGGCAGAGCTGCCCCCAAGAAAA
ACTCCCGACTCCTAGGGCACGGACCGTGTCGTCCCCTGTCCCAACCATCCCGCTAGCACA
CCCGCTGTGCACCGAGAGCTGTGACCTCTGCCAGGGCCTCAGCACTCGGAGACGGGCTGT
GCTGCACCCGGTGGGCACTGCTTGTCACACGCACGTCTAGGATTTAACTTTGTTGTGTGT
GCATCAGCTTCCGTGGCATCTGGTCCTTCGCGTTGCTGTGGAGTGAACCTGTGCCTCATG
TGAGACGGCACCTGCCTGGGATTAATTTATACGTTTTGTAAAAGTTGGGAATGGGCGGGT
CCCCGTGTATTTTCAATTATTTAAGAGAAGGCTTTTTCTTTCAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGACCCGCGCTTCGACACCGAGTACAAATCCCGCGGCTGCAGCAACCAGTACCTGGT
GACGCACAAGCAGAGCCTGGAGGACATGCTGGAGAAGCACCAGACGCTGGAGCGCGACGG
CCGCCTGTGCAAGCGGGAGGTGCAGCTGCGCCTGTCCTACGTCTACGACTGGTCGGCGCC
GCCCTCGCAGTGCTGCCAGCGGAAGGAGGGCATCCCCTGACCGTCGCCTGCAGCCGGCGC
ACGGGCCCAGGAGGGCGGGTTCACCCTTCCTACCGAGCCTGGCGGTGCAGGGGGAGGCCC
GTCCAGAGCCCGGGGTGAGGGCACCGTCCACGGGCGAAGCCGGCAGCTTCCGGCTAGTTG
TTAGCACCACGAGGTCAGCCCCCAAGAGGACTTCGTTTACCTGGTGGCCGTGGGCCCTTC
AGGTGGATGCTGAGCAGCAGCGGACAGCTCCTAAGCCTCGCTCCAGTCGGCGCCCAGTTC
CCCTCAAGAGCCATACATGGCGGCCTGCAGAGGGCTTCTTGTTCCAGGGCTGGGTGGCCC
ATCCTGCAGGCTGCAGCCAGCATCACGTCCAGGCGGAAGTGTCTGGTCCCTGGATTCAGC
ATTCTCCTGGATGGGGGCGGTGGACACCCTGCTGTGGAAGCAGCCCACAGAGACTGTCCA
CTCCTTGTCCCCTCCCCGGTAGGGCTGAGGAACCAGAGGGCAGAGCTGCCCCCAAGAAAA
ACTCCCGACTCCTAGGGCACGGACCGTGTCGTCCCCTGTCCCAACCATCCCGCTAGCACA
CCCGCTGTGCACCGAGAGCTGTGACCTCTGCCAGGGCCTCAGCACTCGGAGACGGGCTGT
GCTGCACCCGGTGGGCACTGCTTGTCACACGCACGTCTAGGATTTAACTTTGTTGTGTGT
GCATCAGCTTCCGTGGCATCTGGTCCTTCGCGTTGCTGTGGAGTGAACCTGTGCCTCATG
TGAGACGGCACCTGCCTGGGATTAATTTATACGTTTTGTAAAAGTTGGGAATGGGCGGGT
CCCCGTGTATTTTCAATTATTTAAGAGAAGGCTTTTTCTTTCAGAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-262, gnl|bosTau2|chr16 (37986199-37985941)
               

               
               1-262, gnl|Hg17|chr1 (1208352-1208602)
               

               
               1-262, gnl|Mm7|chr4 (154981400-154981159)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr16 (37986199-37985941)
               

               
               1-262, gnl|Hg17|chr1 (1208352-1208602)
               

               
               1-262, gnl|Mm7|chr4 (154981400-154981159)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               cli (0.152812)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cli (0.152812)
               

               
               ute (0.132784)

	1-262, gnl\|bosTau2\|chr16 (37986199-37985941)
	1-262, gnl\|Hg17\|chr1 (1208352-1208602)
	1-262, gnl\|Mm7\|chr4 (154981400-154981159)