Non-Coding RNA Search

Ss1.1-Mixn-0032p17.5

Sequence:


               
               GCTGGACGGCGGTGGTGGCAGCGGCGCCGCCCGGGGAATCCGGTGAGGGCTCCTGGGGGC
GCGGCGGCCCAGGCCGACTGAATCTTCGTGGAATGATGAAAATTAAAAATTACTTGATTA
TGAAGCTTCCGATTTATTCCAGACAAAATATTAGATCTGTCTCTAAGAACCACTTCAAAG
CAATCCCTCTCCTCAGGGTCACTGTGGCTGGACGGAGGCAGGCGCCCTGGCCACTGAGGT
GCCCGCCAGCCGGGCTGGCGCTAGTTCTTCACCTCGGCCGCCTCCTGCTCCTTGGCCTTC
TCCTTGGCCTTGGCCTCCACCTTCCCCTCCTTCTCCAGCAGGGCCACGATCTCGGCCACC
TGGCTGGTGGAGATGTGAATGTCTTCCTTGTCCACCAGCTCGATCACCTTGACCAGGTCG
TCGATGTTGATCTTGCCGTCCCGGTTCTCATCCAGGGCCGCGGCCAGGCTGATGAGCTTG
CTCTCGGGAATGTGCCTGATCTGCTTCATGGCGCTGATGAGCTCGGCGACGCTGATGACC
GTCTCCCCCGCAGGCGAGCCCTCGGCGGCCAGGCCCAGCCTGCCGGCCTCCTGACTGGCC
TCCAGCTGGGCCAGCAGCCCGTCCATCTGTCCGATCATCTGCTGTACCCGCTTCGTCAGC
CTCTTGCTGGCTTTAGACTCTTCCACGTATATTTCTCTGCCAGTCTTTGAAAGTTCCTTC
TTGATCTCCTGCAGGTCCTGGCTGTAGTCCTGGACGTCCTCCTTCAGCAGCTCCAGCTCC
TCCTTCTCCTTGGTCAAGGATTTCTTCTGCTCCTTCAGTTTCGAGCAGGCGTCGCTGAGT
AGGTCAATCTCCTCCTGAGTGATCTCCTCTTCCTTCAGGCCTTCCAGCACAGGCGCGGCG
TCCCTCAGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGACGGCGGTGGTGGCAGCGGCGCCGCCCGGGGAATCCGGTGAGGGCTCCTGGGGGC
GCGGCGGCCCAGGCCGACTGAATCTTCGTGGAATGATGAAAATTAAAAATTACTTGATTA
TGAAGCTTCCGATTTATTCCAGACAAAATATTAGATCTGTCTCTAAGAACCACTTCAAAG
CAATCCCTCTCCTCAGGGTCACTGTGGCTGGACGGAGGCAGGCGCCCTGGCCACTGAGGT
GCCCGCCAGCCGGGCTGGCGCTAGTTCTTCACCTCGGCCGCCTCCTGCTCCTTGGCCTTC
TCCTTGGCCTTGGCCTCCACCTTCCCCTCCTTCTCCAGCAGGGCCACGATCTCGGCCACC
TGGCTGGTGGAGATGTGAATGTCTTCCTTGTCCACCAGCTCGATCACCTTGACCAGGTCG
TCGATGTTGATCTTGCCGTCCCGGTTCTCATCCAGGGCCGCGGCCAGGCTGATGAGCTTG
CTCTCGGGAATGTGCCTGATCTGCTTCATGGCGCTGATGAGCTCGGCGACGCTGATGACC
GTCTCCCCCGCAGGCGAGCCCTCGGCGGCCAGGCCCAGCCTGCCGGCCTCCTGACTGGCC
TCCAGCTGGGCCAGCAGCCCGTCCATCTGTCCGATCATCTGCTGTACCCGCTTCGTCAGC
CTCTTGCTGGCTTTAGACTCTTCCACGTATATTTCTCTGCCAGTCTTTGAAAGTTCCTTC
TTGATCTCCTGCAGGTCCTGGCTGTAGTCCTGGACGTCCTCCTTCAGCAGCTCCAGCTCC
TCCTTCTCCTTGGTCAAGGATTTCTTCTGCTCCTTCAGTTTCGAGCAGGCGTCGCTGAGT
AGGTCAATCTCCTCCTGAGTGATCTCCTCTTCCTTCAGGCCTTCCAGCACAGGCGCGGCG
TCCCTCAGGGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               291-409, - strand, RNAz p=0.999758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-409, - strand, RNAz p=0.999758

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               291-409, DB811051 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB811051.1|), blast E-value=0, identity=100% 
               

               
               314-409, LB02714.CR_I17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889641.1|), 
blast E-value=4e-29, identity=92.71% 
               

               
               314-409, LB02719.CR_A16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891052.1|), 
blast E-value=4e-29, identity=92.71% 
               

               
               314-409, 000923BEMN015694HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY124474.1|), blast E-value=4e-29, identity=92.71% 
               

               
               314-409, 000903BEMN009788HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY186112.1|), blast E-value=4e-29, identity=92.71% 
               

               
               314-409, LB03071.CR_N21 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383179.1|), 
blast E-value=4e-29, identity=92.71%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               291-409, DB811051 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB811051.1|), blast E-value=0, identity=100% 
               

               
               314-409, LB02714.CR_I17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889641.1|), 
blast E-value=4e-29, identity=92.71% 
               

               
               314-409, LB02719.CR_A16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891052.1|), 
blast E-value=4e-29, identity=92.71% 
               

               
               314-409, 000923BEMN015694HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY124474.1|), blast E-value=4e-29, identity=92.71% 
               

               
               314-409, 000903BEMN009788HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY186112.1|), blast E-value=4e-29, identity=92.71% 
               

               
               314-409, LB03071.CR_N21 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383179.1|), 
blast E-value=4e-29, identity=92.71%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               57-409, gnl|bosTau2|chr6 (64471947-64472299)
               

               
               57-409, gnl|Hg17|chr4 (1783189-1783533)
               

               
               57-409, gnl|Mm7|chr5 (32805432-32805782)
               


               
               546-739, gnl|bosTau2|chr6 (64473906-64474099)
               

               
               546-739, gnl|Hg17|chr4 (1785684-1785874)
               

               
               546-739, gnl|Mm7|chr5 (32808183-32808373)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-409, gnl|bosTau2|chr6 (64471947-64472299)
               

               
               57-409, gnl|Hg17|chr4 (1783189-1783533)
               

               
               57-409, gnl|Mm7|chr5 (32805432-32805782)
               


               
               546-739, gnl|bosTau2|chr6 (64473906-64474099)
               

               
               546-739, gnl|Hg17|chr4 (1785684-1785874)
               

               
               546-739, gnl|Mm7|chr5 (32808183-32808373)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)

	291-409, DB811051 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB811051.1\|), blast E-value=0, identity=100%
	314-409, LB02714.CR_I17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV889641.1\|), blast E-value=4e-29, identity=92.71%
	314-409, LB02719.CR_A16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV891052.1\|), blast E-value=4e-29, identity=92.71%
	314-409, 000923BEMN015694HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY124474.1\|), blast E-value=4e-29, identity=92.71%
	314-409, 000903BEMN009788HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY186112.1\|), blast E-value=4e-29, identity=92.71%
	314-409, LB03071.CR_N21 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE383179.1\|), blast E-value=4e-29, identity=92.71%

	57-409, gnl\|bosTau2\|chr6 (64471947-64472299)
	57-409, gnl\|Hg17\|chr4 (1783189-1783533)
	57-409, gnl\|Mm7\|chr5 (32805432-32805782)

	546-739, gnl\|bosTau2\|chr6 (64473906-64474099)
	546-739, gnl\|Hg17\|chr4 (1785684-1785874)
	546-739, gnl\|Mm7\|chr5 (32808183-32808373)