Non-Coding RNA Search

Ss1.1-Mixn-0033f08.5

Sequence:


               
               GTAGTGTGTGTGTATAAATATATATATATATATCTCCTTGAAATGGACATACCGTTAGAG
ACGACATTCAAAAGTAACCTATGTATTGGCATCTTTCATATTTCTGATAGTGAGGTATAT
GGTACTAATTACCTTTTCCCTGATATTTGCCAAATTTGAATAAAGGCATTGGTACGAAAT
CACAGAATGTACAGAAAATGTTTTTGGCTTGAAAAATTAACAAATATTTTATGACATACC
ACAGTATACTCTGCCCAAACCAGCAACCTGTCTTTCTTGTTCTTCACATCCCTCTTCTTC
ATCCCTGTTTTTTTCTTTTCTTTTCTTTTTTTTAACACAGTTCTTTTGTAGCATCATTAC
AATTGCAATTCTATGACATTTGGACAATAATAGCATGGTATTAATAGTACAGTAGTCACC
GGTGTGCCACATTTGCATTAGTAAATGCAAAATATACATTTTATAAAGGACAAATTTTGT
TATGTTTTTATTTTCATTACATTGTATAATATTGTAAGATTATTGTATGTCCTAATTTGC
ATTATAAATGTTTTTTCCTACGTAAAGGCATAAATATAGCAACTTTGTATAAAGGTAGCT
TATTAGATTTTTAATTTTTTCTTTTATAAAAAATTGTCTAACAGTGGGACTACCATTGCC
AAATTGTATATGAAATATGAATTTTACCCCTATGGTTAATTTCTTTTATAAACATTCCAT
ATATCTCTAATAAAAGACATAAGTGATACTGTACTATGCATAAATTGTATTTCAATGCTG
TTTCAGATCAGCATTTTAAATTTTGGTTTGCATTTTTAATATTGGCAAAACTTACCACTG
TTGATTAAACCTTATTGTATATGTAACAACATCTTTTGCCCTCTATCCCTCCCCACCCTT
GTTCTCTATTTCTCCCTGTCAGTGCCAACTTCATACATTTTGTAGCATGGCAATAAAATA
TAACTTTTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTGTGTGTGTATAAATATATATATATATATCTCCTTGAAATGGACATACCGTTAGAG
ACGACATTCAAAAGTAACCTATGTATTGGCATCTTTCATATTTCTGATAGTGAGGTATAT
GGTACTAATTACCTTTTCCCTGATATTTGCCAAATTTGAATAAAGGCATTGGTACGAAAT
CACAGAATGTACAGAAAATGTTTTTGGCTTGAAAAATTAACAAATATTTTATGACATACC
ACAGTATACTCTGCCCAAACCAGCAACCTGTCTTTCTTGTTCTTCACATCCCTCTTCTTC
ATCCCTGTTTTTTTCTTTTCTTTTCTTTTTTTTAACACAGTTCTTTTGTAGCATCATTAC
AATTGCAATTCTATGACATTTGGACAATAATAGCATGGTATTAATAGTACAGTAGTCACC
GGTGTGCCACATTTGCATTAGTAAATGCAAAATATACATTTTATAAAGGACAAATTTTGT
TATGTTTTTATTTTCATTACATTGTATAATATTGTAAGATTATTGTATGTCCTAATTTGC
ATTATAAATGTTTTTTCCTACGTAAAGGCATAAATATAGCAACTTTGTATAAAGGTAGCT
TATTAGATTTTTAATTTTTTCTTTTATAAAAAATTGTCTAACAGTGGGACTACCATTGCC
AAATTGTATATGAAATATGAATTTTACCCCTATGGTTAATTTCTTTTATAAACATTCCAT
ATATCTCTAATAAAAGACATAAGTGATACTGTACTATGCATAAATTGTATTTCAATGCTG
TTTCAGATCAGCATTTTAAATTTTGGTTTGCATTTTTAATATTGGCAAAACTTACCACTG
TTGATTAAACCTTATTGTATATGTAACAACATCTTTTGCCCTCTATCCCTCCCCACCCTT
GTTCTCTATTTCTCCCTGTCAGTGCCAACTTCATACATTTTGTAGCATGGCAATAAAATA
TAACTTTTACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               398-510, - strand, RNAz p=0.640065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-510, - strand, RNAz p=0.640065

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-972, gnl|bosTau2|chr5 (28313186-28312223)
               

               
               13-972, gnl|Hg17|chr12 (68258271-68259226)
               

               
               13-972, gnl|Mm7|chr10 (116578802-116577910)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-972, gnl|bosTau2|chr5 (28313186-28312223)
               

               
               13-972, gnl|Hg17|chr12 (68258271-68259226)
               

               
               13-972, gnl|Mm7|chr10 (116578802-116577910)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sug (0.381874)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pgl (0.118483)

	13-972, gnl\|bosTau2\|chr5 (28313186-28312223)
	13-972, gnl\|Hg17\|chr12 (68258271-68259226)
	13-972, gnl\|Mm7\|chr10 (116578802-116577910)

	sug (0.381874)
	rec (0.17307)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	pgl (0.118483)