Non-Coding RNA Search

Ss1.1-Mixn-0033g20.5

Sequence:


               
               AGGGGGTAACTGCTAGGTTGGGCTCAGTGGCTGAGGCCAGGGCCAGTCCAGTAGGAGAGC
ATCCCCCAGCACCTGCTGACATGGCCCCTGGCCGGCGCTGGGGAGCAGGCTGGGGTGGCA
GCCAAAGCAGCAGCCGCCACTACCGGGAGGTGGATGCTCGGCGGGAGCCAGTGGGGATGC
TGTCCCAGGCCCAGTCCTCTTGGGAGAGCCTGGACGACGAGTGGGGGGCAGCCCAGGCAG
GCAGCAGGGCCCCCGTGCCCAGCACGGTGCAAGCCAACACCTTCGAGTTCGCTGATGCTG
AGGAGGATGATGAGGTCAAGGTGTGAGCCGCTGGGCACGGGCTCCGGGCACTGCCTATGG
ACAGCCCAGGTGCAGAGCCAGCCCCTCACCTGCCAGGCGGGTCCTAGATCCCTCCTCACC
TCTGCAGGCCAGACATGGGAGGGAGGCCAGAGGAGACCAAGCTTGTTCCAGGCCCCCAGT
GTTTTCCTGGGTCCTGCTGGGCTGACCTGCCTCTCCACCTCCTCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGTAACTGCTAGGTTGGGCTCAGTGGCTGAGGCCAGGGCCAGTCCAGTAGGAGAGC
ATCCCCCAGCACCTGCTGACATGGCCCCTGGCCGGCGCTGGGGAGCAGGCTGGGGTGGCA
GCCAAAGCAGCAGCCGCCACTACCGGGAGGTGGATGCTCGGCGGGAGCCAGTGGGGATGC
TGTCCCAGGCCCAGTCCTCTTGGGAGAGCCTGGACGACGAGTGGGGGGCAGCCCAGGCAG
GCAGCAGGGCCCCCGTGCCCAGCACGGTGCAAGCCAACACCTTCGAGTTCGCTGATGCTG
AGGAGGATGATGAGGTCAAGGTGTGAGCCGCTGGGCACGGGCTCCGGGCACTGCCTATGG
ACAGCCCAGGTGCAGAGCCAGCCCCTCACCTGCCAGGCGGGTCCTAGATCCCTCCTCACC
TCTGCAGGCCAGACATGGGAGGGAGGCCAGAGGAGACCAAGCTTGTTCCAGGCCCCCAGT
GTTTTCCTGGGTCCTGCTGGGCTGACCTGCCTCTCCACCTCCTCCCCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               3-112, - strand, RNAz p=0.678538
               

               
               7-104, - strand, RNAz p=0.922637
               

               
               225-343, + strand, RNAz p=0.945973

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-112, - strand, RNAz p=0.678538
               

               
               7-104, - strand, RNAz p=0.922637
               

               
               225-343, + strand, RNAz p=0.945973

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               171-265, + strand, RNAmicro p=0.905066

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-265, + strand, RNAmicro p=0.905066

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-343, gnl|bosTau2|chr5 (67391204-67390867)
               

               
               3-343, gnl|canFam2|chr10 (30089715-30089494)
               

               
               3-343, gnl|dasNov1|scaffold_102654 (383-143)
               

               
               3-343, gnl|echTel1|scaffold_160326 (2642-2865)
               

               
               3-343, gnl|hg17|chr22 (36288981-36289220)
               

               
               3-343, gnl|Hg17|chr22 (36289016-36289336)
               

               
               3-343, gnl|mm7|chr15 (78932510-78932776)
               

               
               3-343, gnl|Mm7|chr15 (78932545-78932900)
               

               
               3-343, gnl|monDom2|scaffold_34 (446173-445924)
               

               
               3-343, gnl|oryCun1|scaffold_142202 (624-851)
               

               
               3-343, gnl|panTro1|chr23 (36465835-36466074)
               

               
               3-343, gnl|rheMac2|chr10 (81479672-81479911)
               

               
               3-343, gnl|rn3|chr7 (116844277-116844520)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-343, gnl|bosTau2|chr5 (67391204-67390867)
               

               
               3-343, gnl|canFam2|chr10 (30089715-30089494)
               

               
               3-343, gnl|dasNov1|scaffold_102654 (383-143)
               

               
               3-343, gnl|echTel1|scaffold_160326 (2642-2865)
               

               
               3-343, gnl|hg17|chr22 (36288981-36289220)
               

               
               3-343, gnl|Hg17|chr22 (36289016-36289336)
               

               
               3-343, gnl|mm7|chr15 (78932510-78932776)
               

               
               3-343, gnl|Mm7|chr15 (78932545-78932900)
               

               
               3-343, gnl|monDom2|scaffold_34 (446173-445924)
               

               
               3-343, gnl|oryCun1|scaffold_142202 (624-851)
               

               
               3-343, gnl|panTro1|chr23 (36465835-36466074)
               

               
               3-343, gnl|rheMac2|chr10 (81479672-81479911)
               

               
               3-343, gnl|rn3|chr7 (116844277-116844520)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               eep (0.122564)

	3-112, - strand, RNAz p=0.678538
	7-104, - strand, RNAz p=0.922637
	225-343, + strand, RNAz p=0.945973

	3-343, gnl\|bosTau2\|chr5 (67391204-67390867)
	3-343, gnl\|canFam2\|chr10 (30089715-30089494)
	3-343, gnl\|dasNov1\|scaffold_102654 (383-143)
	3-343, gnl\|echTel1\|scaffold_160326 (2642-2865)
	3-343, gnl\|hg17\|chr22 (36288981-36289220)
	3-343, gnl\|Hg17\|chr22 (36289016-36289336)
	3-343, gnl\|mm7\|chr15 (78932510-78932776)
	3-343, gnl\|Mm7\|chr15 (78932545-78932900)
	3-343, gnl\|monDom2\|scaffold_34 (446173-445924)
	3-343, gnl\|oryCun1\|scaffold_142202 (624-851)
	3-343, gnl\|panTro1\|chr23 (36465835-36466074)
	3-343, gnl\|rheMac2\|chr10 (81479672-81479911)
	3-343, gnl\|rn3\|chr7 (116844277-116844520)