Non-Coding RNA Search

Ss1.1-Mixn-0033i20.5

Sequence:


               
               AGGACACTTAGCCTACATGCTGTGCCGTCTGCGCTCCAGGCTGCCAGCCAGGATGTGGAG
CAGGACTTCGGAGAAGCAGCCATGGAGGGACAGCAGTCAGACCCCTTTCCCGTGTCTTAT
CCACAGACTTGACCACATTGTAATGACAGTAAAGAACATCAAAGACACCACTACGTTTTA
TTCCAAGATTCTGGGCATGGAGGTCGTGACTTTCAAGGGAGACCGGAAAGCATTGTGTTT
TGGAGACCAGAAATTTAACCTCCACGAGATGGGAAAGGAATTTGAACCCAAAGCTGCTTG
CCCAGTCCCTGGTTCCCTGGATATTTGTCTGATCACAGAGGTGCCTTTGGAGGAAGTGGT
CCAGCACCTCAAGGCTTGTGATGTCCCCATTGAGGAGGGTCCAGTCCTCAGAACAGGGGC
AAAAGGGCCCATTATGTCCATTTACTTCCGAGACCCTGACAGAAACCTGATCGAGGTGTC
CAGCTATATGTCCTCATGATGGAGGCGAGCTCTCCGCCCTGCTGTCCCCTGTGATGTCAC
CCTCTGTCTTCCTTCCTGCAAAACGTCATCCCGGGCCCAGAGACCTCCAAGGACGGAGGA
CTTGCGCACGTCACACATCCGGCTGGGAGGCGGGGGACGGGGGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACACTTAGCCTACATGCTGTGCCGTCTGCGCTCCAGGCTGCCAGCCAGGATGTGGAG
CAGGACTTCGGAGAAGCAGCCATGGAGGGACAGCAGTCAGACCCCTTTCCCGTGTCTTAT
CCACAGACTTGACCACATTGTAATGACAGTAAAGAACATCAAAGACACCACTACGTTTTA
TTCCAAGATTCTGGGCATGGAGGTCGTGACTTTCAAGGGAGACCGGAAAGCATTGTGTTT
TGGAGACCAGAAATTTAACCTCCACGAGATGGGAAAGGAATTTGAACCCAAAGCTGCTTG
CCCAGTCCCTGGTTCCCTGGATATTTGTCTGATCACAGAGGTGCCTTTGGAGGAAGTGGT
CCAGCACCTCAAGGCTTGTGATGTCCCCATTGAGGAGGGTCCAGTCCTCAGAACAGGGGC
AAAAGGGCCCATTATGTCCATTTACTTCCGAGACCCTGACAGAAACCTGATCGAGGTGTC
CAGCTATATGTCCTCATGATGGAGGCGAGCTCTCCGCCCTGCTGTCCCCTGTGATGTCAC
CCTCTGTCTTCCTTCCTGCAAAACGTCATCCCGGGCCCAGAGACCTCCAAGGACGGAGGA
CTTGCGCACGTCACACATCCGGCTGGGAGGCGGGGGACGGGGGGGGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51477627|ref|XP_373347.2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51477627|ref|XP_373347.2|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               95-212, + strand, RNAz p=0.634606

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-212, + strand, RNAz p=0.634606

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               78-212, gnl|bosTau2|chrX (26349006-26348872)
               

               
               78-212, gnl|Hg17|chrX (48380486-48380620)
               

               
               78-212, gnl|Mm7|chrX (6448507-6448373)
               


               
               365-627, gnl|bosTau2|chrX (26344985-26344727)
               

               
               365-627, gnl|Hg17|chrX (48387966-48388229)
               

               
               365-627, gnl|Mm7|chrX (6437664-6437416)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-212, gnl|bosTau2|chrX (26349006-26348872)
               

               
               78-212, gnl|Hg17|chrX (48380486-48380620)
               

               
               78-212, gnl|Mm7|chrX (6448507-6448373)
               


               
               365-627, gnl|bosTau2|chrX (26344985-26344727)
               

               
               365-627, gnl|Hg17|chrX (48387966-48388229)
               

               
               365-627, gnl|Mm7|chrX (6437664-6437416)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)

	78-212, gnl\|bosTau2\|chrX (26349006-26348872)
	78-212, gnl\|Hg17\|chrX (48380486-48380620)
	78-212, gnl\|Mm7\|chrX (6448507-6448373)

	365-627, gnl\|bosTau2\|chrX (26344985-26344727)
	365-627, gnl\|Hg17\|chrX (48387966-48388229)
	365-627, gnl\|Mm7\|chrX (6437664-6437416)