Non-Coding RNA Search

Ss1.1-Mixn-0033j15.5

Sequence:


               
               AGAAGTCCCAGCTTTCTTTAAATCAAACCGATCAAAAACACAGTTTCCCAACACCATGGC
CTGCTGTGTTGCCCGATGCTGCAGCGTCCCCACCGGCCCCGCCACCACCATCTGCTCCTC
TGACAAATTCTGCCGGTGTGGAGTCTGCCTGCCCAGCACCTGCCCCCACACGACTTGGCT
ATTGGAGCCAATCTGCTGTGACAACTGCCCCCCACCCTGCCACATCCCTCAGCCCTGTGT
GCCCACCTGCTTCCTGCTCAACTCCTCCCAGCCCACCCCTGGCCTGGAGACCCTCAATCT
TACAACCTACGTTCAGCCCGGCGGCAGTGAGCCCTGCATCCCAAGATGCTGCTGAGTGAT
GACTGCTTTGCTCGGAGCCTGATGTGGAACGAGTCAACCCAGAAGCTCTAGTATTCACCT
GTCTCGGTACCTGCAACAAATGTGGCTCCACTTTCAATGCTGGAACAAGGATGGCACTCT
CATTGACAACCTCCATAAAAAAGAAACCAAGAGATTTTCAATGGCCATGGATCAGAGATC
AGTAAACTAGGGCAATTGGAATAGGTGGATGCTCATAGACTTGCCAAAGTTGCTTGATTC
CTTCATGTGAAAGTGTATCTTTCTTTGGGTGCTTTGGGAATTCTGTTTCCAGTCTTGAAT
GGTATCTTTCTGGAAATTGAGGAACTTCTTCATGATTATCCTAATAAATTTTACATCTCT
GGCATAGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCCCAGCTTTCTTTAAATCAAACCGATCAAAAACACAGTTTCCCAACACCATGGC
CTGCTGTGTTGCCCGATGCTGCAGCGTCCCCACCGGCCCCGCCACCACCATCTGCTCCTC
TGACAAATTCTGCCGGTGTGGAGTCTGCCTGCCCAGCACCTGCCCCCACACGACTTGGCT
ATTGGAGCCAATCTGCTGTGACAACTGCCCCCCACCCTGCCACATCCCTCAGCCCTGTGT
GCCCACCTGCTTCCTGCTCAACTCCTCCCAGCCCACCCCTGGCCTGGAGACCCTCAATCT
TACAACCTACGTTCAGCCCGGCGGCAGTGAGCCCTGCATCCCAAGATGCTGCTGAGTGAT
GACTGCTTTGCTCGGAGCCTGATGTGGAACGAGTCAACCCAGAAGCTCTAGTATTCACCT
GTCTCGGTACCTGCAACAAATGTGGCTCCACTTTCAATGCTGGAACAAGGATGGCACTCT
CATTGACAACCTCCATAAAAAAGAAACCAAGAGATTTTCAATGGCCATGGATCAGAGATC
AGTAAACTAGGGCAATTGGAATAGGTGGATGCTCATAGACTTGCCAAAGTTGCTTGATTC
CTTCATGTGAAAGTGTATCTTTCTTTGGGTGCTTTGGGAATTCTGTTTCCAGTCTTGAAT
GGTATCTTTCTGGAAATTGAGGAACTTCTTCATGATTATCCTAATAAATTTTACATCTCT
GGCATAGCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CPW1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CPW1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-238, - strand, RNAz p=0.645686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-238, - strand, RNAz p=0.645686

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-732, gnl|bosTau2|chr19 (33579131-33579854)
               

               
               1-732, gnl|canFam2|chr9 (25023406-25024238)
               

               
               1-732, gnl|dasNov1|scaffold_47438 (9337-10161)
               

               
               1-732, gnl|echTel1|scaffold_316790 (59376-60242)
               

               
               1-732, gnl|Hg17|chr17 (36403931-36403208)
               

               
               1-732, gnl|hg17|chr17_random (2566190-2567028)
               

               
               1-732, gnl|loxAfr1|scaffold_539 (25288-24460)
               

               
               1-732, gnl|mm7|chr11 (99660216-99659389)
               

               
               1-732, gnl|Mm7|chr11 (99659895-99659179)
               

               
               1-732, gnl|monDom2|scaffold_18 (50602242-50601425)
               

               
               1-732, gnl|oryCun1|scaffold_141193 (7301-6462)
               

               
               1-732, gnl|panTro1|chr19 (39655806-39654964)
               

               
               1-732, gnl|rn3|chr10 (88512812-88511976)
               


               
               36-429, gnl|bosTau2|chr16 (20535900-20536290)
               

               
               36-429, gnl|Hg17|chr17_random (2560798-2561187)
               

               
               36-429, gnl|Mm7|chr11 (99665857-99665465)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr19 (33579131-33579854)
               

               
               1-732, gnl|canFam2|chr9 (25023406-25024238)
               

               
               1-732, gnl|dasNov1|scaffold_47438 (9337-10161)
               

               
               1-732, gnl|echTel1|scaffold_316790 (59376-60242)
               

               
               1-732, gnl|Hg17|chr17 (36403931-36403208)
               

               
               1-732, gnl|hg17|chr17_random (2566190-2567028)
               

               
               1-732, gnl|loxAfr1|scaffold_539 (25288-24460)
               

               
               1-732, gnl|mm7|chr11 (99660216-99659389)
               

               
               1-732, gnl|Mm7|chr11 (99659895-99659179)
               

               
               1-732, gnl|monDom2|scaffold_18 (50602242-50601425)
               

               
               1-732, gnl|oryCun1|scaffold_141193 (7301-6462)
               

               
               1-732, gnl|panTro1|chr19 (39655806-39654964)
               

               
               1-732, gnl|rn3|chr10 (88512812-88511976)
               


               
               36-429, gnl|bosTau2|chr16 (20535900-20536290)
               

               
               36-429, gnl|Hg17|chr17_random (2560798-2561187)
               

               
               36-429, gnl|Mm7|chr11 (99665857-99665465)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ski (2.05429)
               

               
               ton (1.404)
               

               
               nep (1.10355)
               

               
               csk (0.562984)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (2.05429)
               

               
               ton (1.404)
               

               
               nep (1.10355)
               

               
               csk (0.562984)

	1-732, gnl\|bosTau2\|chr19 (33579131-33579854)
	1-732, gnl\|canFam2\|chr9 (25023406-25024238)
	1-732, gnl\|dasNov1\|scaffold_47438 (9337-10161)
	1-732, gnl\|echTel1\|scaffold_316790 (59376-60242)
	1-732, gnl\|Hg17\|chr17 (36403931-36403208)
	1-732, gnl\|hg17\|chr17_random (2566190-2567028)
	1-732, gnl\|loxAfr1\|scaffold_539 (25288-24460)
	1-732, gnl\|mm7\|chr11 (99660216-99659389)
	1-732, gnl\|Mm7\|chr11 (99659895-99659179)
	1-732, gnl\|monDom2\|scaffold_18 (50602242-50601425)
	1-732, gnl\|oryCun1\|scaffold_141193 (7301-6462)
	1-732, gnl\|panTro1\|chr19 (39655806-39654964)
	1-732, gnl\|rn3\|chr10 (88512812-88511976)

	36-429, gnl\|bosTau2\|chr16 (20535900-20536290)
	36-429, gnl\|Hg17\|chr17_random (2560798-2561187)
	36-429, gnl\|Mm7\|chr11 (99665857-99665465)