Non-Coding RNA Search

Ss1.1-Mixn-0033j18.5

Sequence:


               
               GCTGACCCAGAAGCGGAGGAAGCGGCGGCGGATGCTGAGGGAGAGAAGCCCGTCGCCCCC
GACGGTTCAGAGCAAGCGGCAGACGCCTTCGCCGAGACTGGCGCTGTCCACCCGCTACAG
CCCCGACGAGATGAACAGCAGCCCCAACTTCGAGGAGAAGAAGAAGTTTCTGACCATCTT
CAGCCTGGCCCACGTCAGCGCCGAGAAGAGGAAAGACGAGGAGAAGCTTGTTGAGCTGCT
CCATGCCATGAAGCAGAAGGCACTGTCAGCCAGGGCAGACCCGCTCAGGAGCTCTCCGAG
GGACAGTCCCGCTGTCTCCCTGAGCGAACCAGCCACGCAGCCCGCCTCTCTGGATACGGA
GAAGCCTGTGGGCATCGCCGCCTCCCTGCCTGACGTGCCGAAGGCCCCGGAGCCCGCGAG
ACTGGAGCCGCTCCGGCCCCAGGAGCGAGGACAGGAGCCGGCGCCCACCGGCGGCGAGAA
GGCCAGGCTGAGCGAGACCCCCGGCGGCAGGAAGAGCCTGAGCATGCTTCACTACATCCG
GGGCCCCGCGCCCAAGGACGTCCCCGTGCCGCTGTCGCACAGCGTCAACGGCAAGAGCAA
GCCGTGGGAGCCCTTCGTGGCGGAGGAGTTTGCACATCAGTTCCACGAGTCCGTCCTGCA
GTCCACGCAGAAGGCCCTGCAGAAGCATAAAGGCGGTGCAGCGGTGCTGTCTGCAGAGCA
GAACCACAAGGTCGACGCCTCCGTCCACTACAACATTCCCGAGCTGCAGTCCTCCAGCAG
GCTGCCTCTGCCCCAGCACAATGGGCAGCAGGAGCCCCCCGCTGGCAGGAAGGGCCCCCT
GGCGCAGGAGATGGACCCAGACTCCGAGGAGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGACCCAGAAGCGGAGGAAGCGGCGGCGGATGCTGAGGGAGAGAAGCCCGTCGCCCCC
GACGGTTCAGAGCAAGCGGCAGACGCCTTCGCCGAGACTGGCGCTGTCCACCCGCTACAG
CCCCGACGAGATGAACAGCAGCCCCAACTTCGAGGAGAAGAAGAAGTTTCTGACCATCTT
CAGCCTGGCCCACGTCAGCGCCGAGAAGAGGAAAGACGAGGAGAAGCTTGTTGAGCTGCT
CCATGCCATGAAGCAGAAGGCACTGTCAGCCAGGGCAGACCCGCTCAGGAGCTCTCCGAG
GGACAGTCCCGCTGTCTCCCTGAGCGAACCAGCCACGCAGCCCGCCTCTCTGGATACGGA
GAAGCCTGTGGGCATCGCCGCCTCCCTGCCTGACGTGCCGAAGGCCCCGGAGCCCGCGAG
ACTGGAGCCGCTCCGGCCCCAGGAGCGAGGACAGGAGCCGGCGCCCACCGGCGGCGAGAA
GGCCAGGCTGAGCGAGACCCCCGGCGGCAGGAAGAGCCTGAGCATGCTTCACTACATCCG
GGGCCCCGCGCCCAAGGACGTCCCCGTGCCGCTGTCGCACAGCGTCAACGGCAAGAGCAA
GCCGTGGGAGCCCTTCGTGGCGGAGGAGTTTGCACATCAGTTCCACGAGTCCGTCCTGCA
GTCCACGCAGAAGGCCCTGCAGAAGCATAAAGGCGGTGCAGCGGTGCTGTCTGCAGAGCA
GAACCACAAGGTCGACGCCTCCGTCCACTACAACATTCCCGAGCTGCAGTCCTCCAGCAG
GCTGCCTCTGCCCCAGCACAATGGGCAGCAGGAGCCCCCCGCTGGCAGGAAGGGCCCCCT
GGCGCAGGAGATGGACCCAGACTCCGAGGAGGAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37588999|gb|AAH00753.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37588999|gb|AAH00753.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-221, gnl|bosTau2|chr18 (7925197-7925417)
               

               
               1-221, gnl|Hg17|chr16 (84254507-84254724)
               

               
               1-221, gnl|Mm7|chr8 (119207666-119207883)
               


               
               326-693, gnl|bosTau2|chr18 (7927522-7927889)
               

               
               326-693, gnl|Hg17|chr16 (84257082-84257455)
               

               
               326-693, gnl|Mm7|chr8 (119209907-119210280)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr18 (7925197-7925417)
               

               
               1-221, gnl|Hg17|chr16 (84254507-84254724)
               

               
               1-221, gnl|Mm7|chr8 (119207666-119207883)
               


               
               326-693, gnl|bosTau2|chr18 (7927522-7927889)
               

               
               326-693, gnl|Hg17|chr16 (84257082-84257455)
               

               
               326-693, gnl|Mm7|chr8 (119209907-119210280)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-221, gnl\|bosTau2\|chr18 (7925197-7925417)
	1-221, gnl\|Hg17\|chr16 (84254507-84254724)
	1-221, gnl\|Mm7\|chr8 (119207666-119207883)

	326-693, gnl\|bosTau2\|chr18 (7927522-7927889)
	326-693, gnl\|Hg17\|chr16 (84257082-84257455)
	326-693, gnl\|Mm7\|chr8 (119209907-119210280)