Ss1.1-Mixn-0033k22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCGATGTTGGCCGACCTGGAGGAAAGCCTCGGCACCTTCCAGTCCACCAAAGCTGTGTA CGACCGCATCCTGGACCTGCGCATCGCCACGCCTCAGATCGTCATCAACTACGCCATGTT TCTGGAGGAGCACAAGTACTTTGAGGAGAGCTTCAAGGCATATGAGCGCGGCATCTCGCT GTTCAAGTGGCCCAACGTGTCTGACATCTGGAGCACCTACCTGACCAAGTTCATTGCCCG CTATGGGGGCCGAAAGCTAGAGCGGGCACGGGACCTCTTTGAGCAGGCGCTGGATGGCTG CCCTCCCAAATATGCAAAGACGCTGTACTTGCTGTACGCGCAGCTGGAGGAGGAGTGGGG CCTGGCCAGGCACGCCATGGCCGTGTACGAGCGGGCCACCCGGGCTGTGGAGCCCTCCCA GCAATACGACATGTTCAACATCTATATCAAGCGGGCAGCTGAGATCTACGGGGTCACCCA CACCCGGGGCATCTACCAGAAGGCCATTGAGGTGCTGTCGGATGAGCACGCCCGGGAGAT GTGCCTGCGGTTCGCCGATATGGAGTGTAAGCTTGGGGAGATCGACCGCGCCCGGGCCAT CTACAGCTTCTGCTCACAGATCTGCGACCCCCGGACTACCGGGGCGTTCTGGCAGACATG GAAGGACTTCGAGGTCCGGCACGGCAACGAGGACACCATCCGGGAGATGCTTCGCATCCG CCGTAGCGTACAGGCCACCTACAACACGCAGGTCAACTTCATGGCCTCCCAGATGCTCAA GGTGTCAGGCAGCGCCACGGGCACCGTGTCCGACCTTGCCCCTGGGCAGAGTGGCATGGA TGACATGAAGCTGTTAGAGCAGCGGGCGGAGCAGCTGGCAGCTGAGGCCGAGCGGGACCA GCCTTCACGGGCCCAGAGCAAGATCCTGTTTGTGAGGAGCGACGCCTCTCGAGAGGAGCT GGCCGAGCTGGCGCAGCAGGCCAACCCAGAGGAGATTGAGCTGGGCGAGGACGAGGACGA GGACGAGATGGACCTGGAGCCCAATGAGGTGCGGCTGGAGCAGCAGAGCGTGCCGGCTGC CGTGTTTGGGAGCCTGAAGGAAGACTGACTCCCACTCCCACCCCCCACCTCCCCCGCTCC CCCAATGAAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCGATGTTGGCCGACCTGGAGGAAAGCCTCGGCACCTTCCAGTCCACCAAAGCTGTGTA CGACCGCATCCTGGACCTGCGCATCGCCACGCCTCAGATCGTCATCAACTACGCCATGTT TCTGGAGGAGCACAAGTACTTTGAGGAGAGCTTCAAGGCATATGAGCGCGGCATCTCGCT GTTCAAGTGGCCCAACGTGTCTGACATCTGGAGCACCTACCTGACCAAGTTCATTGCCCG CTATGGGGGCCGAAAGCTAGAGCGGGCACGGGACCTCTTTGAGCAGGCGCTGGATGGCTG CCCTCCCAAATATGCAAAGACGCTGTACTTGCTGTACGCGCAGCTGGAGGAGGAGTGGGG CCTGGCCAGGCACGCCATGGCCGTGTACGAGCGGGCCACCCGGGCTGTGGAGCCCTCCCA GCAATACGACATGTTCAACATCTATATCAAGCGGGCAGCTGAGATCTACGGGGTCACCCA CACCCGGGGCATCTACCAGAAGGCCATTGAGGTGCTGTCGGATGAGCACGCCCGGGAGAT GTGCCTGCGGTTCGCCGATATGGAGTGTAAGCTTGGGGAGATCGACCGCGCCCGGGCCAT CTACAGCTTCTGCTCACAGATCTGCGACCCCCGGACTACCGGGGCGTTCTGGCAGACATG GAAGGACTTCGAGGTCCGGCACGGCAACGAGGACACCATCCGGGAGATGCTTCGCATCCG CCGTAGCGTACAGGCCACCTACAACACGCAGGTCAACTTCATGGCCTCCCAGATGCTCAA GGTGTCAGGCAGCGCCACGGGCACCGTGTCCGACCTTGCCCCTGGGCAGAGTGGCATGGA TGACATGAAGCTGTTAGAGCAGCGGGCGGAGCAGCTGGCAGCTGAGGCCGAGCGGGACCA GCCTTCACGGGCCCAGAGCAAGATCCTGTTTGTGAGGAGCGACGCCTCTCGAGAGGAGCT GGCCGAGCTGGCGCAGCAGGCCAACCCAGAGGAGATTGAGCTGGGCGAGGACGAGGACGA GGACGAGATGGACCTGGAGCCCAATGAGGTGCGGCTGGAGCAGCAGAGCGTGCCGGCTGC CGTGTTTGGGAGCCTGAAGGAAGACTGACTCCCACTCCCACCCCCCACCTCCCCCGCTCC CCCAATGAAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 156-320, gnl|bosTau2|chr7 (12372105-12371941) | |
| 156-320, gnl|canFam2|chr20 (55395968-55396164) | |
| 156-320, gnl|danRer3|chrUn (55823098-55822930) | |
| 156-320, gnl|dasNov1|scaffold_169483 (1543-1340) | |
| 156-320, gnl|echTel1|scaffold_136960 (876-1073) | |
| 156-320, gnl|fr1|chrUn (189938708-189938525) | |
| 156-320, gnl|hg17|chr19 (7592016-7592214) | |
| 156-320, gnl|Hg17|chr19 (7592185-7592021) | |
| 156-320, gnl|mm7|chr8 (3574144-3574337) | |
| 156-320, gnl|Mm7|chr8 (3574313-3574149) | |
| 156-320, gnl|monDom2|scaffold_54 (534114-533923) | |
| 156-320, gnl|panTro1|chr20 (7941976-7942174) | |
| 156-320, gnl|rheMac2|chr19 (7571701-7571899) | |
| 156-320, gnl|rn3|chr12 (2544067-2543874) | |
| 156-320, gnl|tetNig1|chrUn_random (131531301-131531131) | |
| 156-320, gnl|xenTro1|scaffold_903 (182519-182718) | |
| 321-515, gnl|bosTau2|chr7 (12371848-12371654) | |
| 321-515, gnl|Hg17|chr19 (7591922-7591728) | |
| 321-515, gnl|Mm7|chr8 (3574061-3573867) | |
| 634-804, gnl|bosTau2|chr7 (12371260-12371090) | |
| 634-804, gnl|canFam2|chr20 (55395186-55395366) | |
| 634-804, gnl|danRer3|chrUn (55825349-55825167) | |
| 634-804, gnl|dasNov1|scaffold_39961 (17457-17267) | |
| 634-804, gnl|echTel1|scaffold_136960 (109-289) | |
| 634-804, gnl|fr1|chrUn (189939489-189939310) | |
| 634-804, gnl|hg17|chr19 (7591157-7591337) | |
| 634-804, gnl|Hg17|chr19 (7591333-7591163) | |
| 634-804, gnl|mm7|chr8 (3573320-3573500) | |
| 634-804, gnl|Mm7|chr8 (3573496-3573326) | |
| 634-804, gnl|monDom2|scaffold_54 (535612-535432) | |
| 634-804, gnl|oryCun1|scaffold_203895 (4667-4846) | |
| 634-804, gnl|panTro1|chr20 (7941112-7941292) | |
| 634-804, gnl|rheMac2|chr19 (7570839-7571019) | |
| 634-804, gnl|rn3|chr12 (2544905-2544725) | |
| 634-804, gnl|tetNig1|chrUn_random (159702761-159702935) | |
| 634-804, gnl|xenTro1|scaffold_903 (181230-181391) | |
| 806-937, gnl|bosTau2|chr7 (12370888-12370757) | |
| 806-937, gnl|Hg17|chr19 (7590962-7590831) | |
| 806-937, gnl|Mm7|chr8 (3573152-3573021) | |
| 1046-1152, gnl|bosTau2|chr7 (12370439-12370336) | |
| 1046-1152, gnl|Hg17|chr19 (7590534-7590426) | |
| 1046-1152, gnl|Mm7|chr8 (3572697-3572576) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-320, gnl|bosTau2|chr7 (12372105-12371941) | |
| 156-320, gnl|canFam2|chr20 (55395968-55396164) | |
| 156-320, gnl|danRer3|chrUn (55823098-55822930) | |
| 156-320, gnl|dasNov1|scaffold_169483 (1543-1340) | |
| 156-320, gnl|echTel1|scaffold_136960 (876-1073) | |
| 156-320, gnl|fr1|chrUn (189938708-189938525) | |
| 156-320, gnl|hg17|chr19 (7592016-7592214) | |
| 156-320, gnl|Hg17|chr19 (7592185-7592021) | |
| 156-320, gnl|mm7|chr8 (3574144-3574337) | |
| 156-320, gnl|Mm7|chr8 (3574313-3574149) | |
| 156-320, gnl|monDom2|scaffold_54 (534114-533923) | |
| 156-320, gnl|panTro1|chr20 (7941976-7942174) | |
| 156-320, gnl|rheMac2|chr19 (7571701-7571899) | |
| 156-320, gnl|rn3|chr12 (2544067-2543874) | |
| 156-320, gnl|tetNig1|chrUn_random (131531301-131531131) | |
| 156-320, gnl|xenTro1|scaffold_903 (182519-182718) | |
| 321-515, gnl|bosTau2|chr7 (12371848-12371654) | |
| 321-515, gnl|Hg17|chr19 (7591922-7591728) | |
| 321-515, gnl|Mm7|chr8 (3574061-3573867) | |
| 634-804, gnl|bosTau2|chr7 (12371260-12371090) | |
| 634-804, gnl|canFam2|chr20 (55395186-55395366) | |
| 634-804, gnl|danRer3|chrUn (55825349-55825167) | |
| 634-804, gnl|dasNov1|scaffold_39961 (17457-17267) | |
| 634-804, gnl|echTel1|scaffold_136960 (109-289) | |
| 634-804, gnl|fr1|chrUn (189939489-189939310) | |
| 634-804, gnl|hg17|chr19 (7591157-7591337) | |
| 634-804, gnl|Hg17|chr19 (7591333-7591163) | |
| 634-804, gnl|mm7|chr8 (3573320-3573500) | |
| 634-804, gnl|Mm7|chr8 (3573496-3573326) | |
| 634-804, gnl|monDom2|scaffold_54 (535612-535432) | |
| 634-804, gnl|oryCun1|scaffold_203895 (4667-4846) | |
| 634-804, gnl|panTro1|chr20 (7941112-7941292) | |
| 634-804, gnl|rheMac2|chr19 (7570839-7571019) | |
| 634-804, gnl|rn3|chr12 (2544905-2544725) | |
| 634-804, gnl|tetNig1|chrUn_random (159702761-159702935) | |
| 634-804, gnl|xenTro1|scaffold_903 (181230-181391) | |
| 806-937, gnl|bosTau2|chr7 (12370888-12370757) | |
| 806-937, gnl|Hg17|chr19 (7590962-7590831) | |
| 806-937, gnl|Mm7|chr8 (3573152-3573021) | |
| 1046-1152, gnl|bosTau2|chr7 (12370439-12370336) | |
| 1046-1152, gnl|Hg17|chr19 (7590534-7590426) | |
| 1046-1152, gnl|Mm7|chr8 (3572697-3572576) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fbs (0.350693) | |
| cga (0.279096) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| cga (0.279096) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| cty (0.10408) |