Ss1.1-Mixn-0033n05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCATCCATAGCAGATCTCTTCGCCGAATCCCTGCAGTGCAAGGTGGACTGTGAGACCA ACTTGACCCCCAACGTGGGTGGCTACTTCGTGGAGAAGTTCGTGGCCACCATGTACCACT ACCTGCAGTTTGCCTACTACAAGTTGAACGACGTGCGCCAGGCCGCGCGCAGTGCCGCCA GCTACATGCTCTTCGACCCTGCAGACAGTGTGATGCAGCAGAACCTGGTGTATTACCGCT TCCACAGAGCTCGCTGGGGCCTGGAGGAGGAGGACTTCCAGCCCAGAGAGGAGGCCGTAC TCTACCACAACCAGACAGCCGAGCTGCGGGAGCTGCTGGACTTTGCCCACATGTACCTGC AGTCAGATGATGAGATGGAGCTGGAGGAGCCAGAACCACCCACGGAGCCTGAGGAGCCTC CATCTGATGCCGAGTTTGAAGGGGAGGGCGACTACGAGGAGAGCATCTATGCCGACTGGT GGCAGGAGCCCGACGCCAAGGGTGACGAGGCTGAGGCCGAGCCGGAGCCTGAACTCCCAT GAGAAGAGAGGTGGGGCAGAGCTTGGGAAGCCTGGCCCAGGGGCACCACCCTCACCAGCC TGGGCAGCTACAAGAACTATTTATTAAACATGTAAAGTGGACAGAGCTGACCAGGCCCCA GCCTATCCCACCTGTGGACACTGCTCCCCAGACCCCTCCTGCCTCCTTACTGGGTCCCTA GACCTCAGGACCTGCCCTCCTCCCAGGGCTCTCCCCACCAGGACAGTCTCCTGGAGAAGA TTCCAGCTCTTCCTGGTTGGGGTCCCAGCCTGAACTGCAGAGACAGCAAAGGGGCAGCTA CATTATGAAGAGCAGGGGACCAGGAGTCCAGCTGTTCCTGGCAGATCGGTATTGGGTGCT CAATAAACCTTTCTTATTGAATGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCATCCATAGCAGATCTCTTCGCCGAATCCCTGCAGTGCAAGGTGGACTGTGAGACCA ACTTGACCCCCAACGTGGGTGGCTACTTCGTGGAGAAGTTCGTGGCCACCATGTACCACT ACCTGCAGTTTGCCTACTACAAGTTGAACGACGTGCGCCAGGCCGCGCGCAGTGCCGCCA GCTACATGCTCTTCGACCCTGCAGACAGTGTGATGCAGCAGAACCTGGTGTATTACCGCT TCCACAGAGCTCGCTGGGGCCTGGAGGAGGAGGACTTCCAGCCCAGAGAGGAGGCCGTAC TCTACCACAACCAGACAGCCGAGCTGCGGGAGCTGCTGGACTTTGCCCACATGTACCTGC AGTCAGATGATGAGATGGAGCTGGAGGAGCCAGAACCACCCACGGAGCCTGAGGAGCCTC CATCTGATGCCGAGTTTGAAGGGGAGGGCGACTACGAGGAGAGCATCTATGCCGACTGGT GGCAGGAGCCCGACGCCAAGGGTGACGAGGCTGAGGCCGAGCCGGAGCCTGAACTCCCAT GAGAAGAGAGGTGGGGCAGAGCTTGGGAAGCCTGGCCCAGGGGCACCACCCTCACCAGCC TGGGCAGCTACAAGAACTATTTATTAAACATGTAAAGTGGACAGAGCTGACCAGGCCCCA GCCTATCCCACCTGTGGACACTGCTCCCCAGACCCCTCCTGCCTCCTTACTGGGTCCCTA GACCTCAGGACCTGCCCTCCTCCCAGGGCTCTCCCCACCAGGACAGTCTCCTGGAGAAGA TTCCAGCTCTTCCTGGTTGGGGTCCCAGCCTGAACTGCAGAGACAGCAAAGGGGCAGCTA CATTATGAAGAGCAGGGGACCAGGAGTCCAGCTGTTCCTGGCAGATCGGTATTGGGTGCT CAATAAACCTTTCTTATTGAATGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 14-132, - strand, RNAz p=0.724547 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 14-132, - strand, RNAz p=0.724547 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 14-144, gnl|bosTau2|chr23 (153734-153864) | |
| 14-144, gnl|canFam2|chr9 (24332774-24332630) | |
| 14-144, gnl|danRer3|chr19 (68972490-68972352) | |
| 14-144, gnl|dasNov1|scaffold_75641 (4491-4346) | |
| 14-144, gnl|echTel1|scaffold_156691 (14345-14194) | |
| 14-144, gnl|fr1|chrUn (96646831-96646976) | |
| 14-144, gnl|galGal2|chr2 (43572908-43572772) | |
| 14-144, gnl|hg17|chr17 (37219471-37219616) | |
| 14-144, gnl|Hg17|chr17 (37219614-37219484) | |
| 14-144, gnl|loxAfr1|scaffold_110908 (1087-946) | |
| 14-144, gnl|mm7|chr11 (100521727-100521872) | |
| 14-144, gnl|Mm7|chr11 (100521870-100521740) | |
| 14-144, gnl|monDom2|scaffold_18 (52072103-52072247) | |
| 14-144, gnl|oryCun1|scaffold_204030 (40567-40454) | |
| 14-144, gnl|panTro1|chr19 (40419248-40419393) | |
| 14-144, gnl|rheMac2|chr16 (51904891-51905036) | |
| 14-144, gnl|rn3|chr10 (89365342-89365487) | |
| 14-144, gnl|tetNig1|chrUn_random (83292436-83292579) | |
| 14-144, gnl|xenTro1|scaffold_394 (725113-725249) | |
| 145-287, gnl|bosTau2|chr22 (4991981-4992123) | |
| 145-287, gnl|canFam2|chr23 (6719749-6719546) | |
| 145-287, gnl|danRer3|chr19 (68974477-68974655) | |
| 145-287, gnl|dasNov1|scaffold_229898 (50-252) | |
| 145-287, gnl|echTel1|scaffold_312412 (8258-8095) | |
| 145-287, gnl|fr1|chrUn (295287832-295287678) | |
| 145-287, gnl|galGal2|chr2 (43574501-43574684) | |
| 145-287, gnl|hg17|chr3 (33149007-33149212) | |
| 145-287, gnl|Hg17|chr3 (33149051-33149193) | |
| 145-287, gnl|mm7|chr9 (114031192-114030992) | |
| 145-287, gnl|Mm7|chr9 (114031151-114031009) | |
| 145-287, gnl|monDom2|scaffold_7 (61414630-61414415) | |
| 145-287, gnl|oryCun1|scaffold_204030 (40903-41046) | |
| 145-287, gnl|panTro1|chr2_random (33059259-33059054) | |
| 145-287, gnl|rheMac2|chr2 (175618568-175618773) | |
| 145-287, gnl|rn3|chr8 (118778236-118778045) | |
| 145-287, gnl|tetNig1|chr21 (1325126-1324950) | |
| 145-287, gnl|xenTro1|scaffold_1370 (57165-57359) | |
| 373-517, gnl|bosTau2|chr23 (157629-157773) | |
| 373-517, gnl|canFam2|chr9 (24336821-24336718) | |
| 373-517, gnl|dasNov1|scaffold_75641 (7947-7844) | |
| 373-517, gnl|fr1|chrUn (96645465-96645566) | |
| 373-517, gnl|galGal2|chrUn (20333608-20333711) | |
| 373-517, gnl|hg17|chr17 (37213058-37213161) | |
| 373-517, gnl|Hg17|chr17 (37213211-37213067) | |
| 373-517, gnl|loxAfr1|scaffold_110908 (4705-4602) | |
| 373-517, gnl|mm7|chr11 (100518395-100518498) | |
| 373-517, gnl|Mm7|chr11 (100518548-100518404) | |
| 373-517, gnl|monDom2|scaffold_18 (52062045-52062148) | |
| 373-517, gnl|oryCun1|scaffold_204030 (43061-42958) | |
| 373-517, gnl|panTro1|chr19 (40412772-40412875) | |
| 373-517, gnl|rn3|chr10 (89362028-89362131) | |
| 373-517, gnl|tetNig1|chrUn_random (83291323-83291426) | |
| 373-517, gnl|xenTro1|scaffold_394 (721968-722071) | |
| 724-925, gnl|bosTau2|chr23 (158275-158485) | |
| 724-925, gnl|Hg17|chr17 (37211926-37211730) | |
| 724-925, gnl|Mm7|chr11 (100517692-100517506) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-144, gnl|bosTau2|chr23 (153734-153864) | |
| 14-144, gnl|canFam2|chr9 (24332774-24332630) | |
| 14-144, gnl|danRer3|chr19 (68972490-68972352) | |
| 14-144, gnl|dasNov1|scaffold_75641 (4491-4346) | |
| 14-144, gnl|echTel1|scaffold_156691 (14345-14194) | |
| 14-144, gnl|fr1|chrUn (96646831-96646976) | |
| 14-144, gnl|galGal2|chr2 (43572908-43572772) | |
| 14-144, gnl|hg17|chr17 (37219471-37219616) | |
| 14-144, gnl|Hg17|chr17 (37219614-37219484) | |
| 14-144, gnl|loxAfr1|scaffold_110908 (1087-946) | |
| 14-144, gnl|mm7|chr11 (100521727-100521872) | |
| 14-144, gnl|Mm7|chr11 (100521870-100521740) | |
| 14-144, gnl|monDom2|scaffold_18 (52072103-52072247) | |
| 14-144, gnl|oryCun1|scaffold_204030 (40567-40454) | |
| 14-144, gnl|panTro1|chr19 (40419248-40419393) | |
| 14-144, gnl|rheMac2|chr16 (51904891-51905036) | |
| 14-144, gnl|rn3|chr10 (89365342-89365487) | |
| 14-144, gnl|tetNig1|chrUn_random (83292436-83292579) | |
| 14-144, gnl|xenTro1|scaffold_394 (725113-725249) | |
| 145-287, gnl|bosTau2|chr22 (4991981-4992123) | |
| 145-287, gnl|canFam2|chr23 (6719749-6719546) | |
| 145-287, gnl|danRer3|chr19 (68974477-68974655) | |
| 145-287, gnl|dasNov1|scaffold_229898 (50-252) | |
| 145-287, gnl|echTel1|scaffold_312412 (8258-8095) | |
| 145-287, gnl|fr1|chrUn (295287832-295287678) | |
| 145-287, gnl|galGal2|chr2 (43574501-43574684) | |
| 145-287, gnl|hg17|chr3 (33149007-33149212) | |
| 145-287, gnl|Hg17|chr3 (33149051-33149193) | |
| 145-287, gnl|mm7|chr9 (114031192-114030992) | |
| 145-287, gnl|Mm7|chr9 (114031151-114031009) | |
| 145-287, gnl|monDom2|scaffold_7 (61414630-61414415) | |
| 145-287, gnl|oryCun1|scaffold_204030 (40903-41046) | |
| 145-287, gnl|panTro1|chr2_random (33059259-33059054) | |
| 145-287, gnl|rheMac2|chr2 (175618568-175618773) | |
| 145-287, gnl|rn3|chr8 (118778236-118778045) | |
| 145-287, gnl|tetNig1|chr21 (1325126-1324950) | |
| 145-287, gnl|xenTro1|scaffold_1370 (57165-57359) | |
| 373-517, gnl|bosTau2|chr23 (157629-157773) | |
| 373-517, gnl|canFam2|chr9 (24336821-24336718) | |
| 373-517, gnl|dasNov1|scaffold_75641 (7947-7844) | |
| 373-517, gnl|fr1|chrUn (96645465-96645566) | |
| 373-517, gnl|galGal2|chrUn (20333608-20333711) | |
| 373-517, gnl|hg17|chr17 (37213058-37213161) | |
| 373-517, gnl|Hg17|chr17 (37213211-37213067) | |
| 373-517, gnl|loxAfr1|scaffold_110908 (4705-4602) | |
| 373-517, gnl|mm7|chr11 (100518395-100518498) | |
| 373-517, gnl|Mm7|chr11 (100518548-100518404) | |
| 373-517, gnl|monDom2|scaffold_18 (52062045-52062148) | |
| 373-517, gnl|oryCun1|scaffold_204030 (43061-42958) | |
| 373-517, gnl|panTro1|chr19 (40412772-40412875) | |
| 373-517, gnl|rn3|chr10 (89362028-89362131) | |
| 373-517, gnl|tetNig1|chrUn_random (83291323-83291426) | |
| 373-517, gnl|xenTro1|scaffold_394 (721968-722071) | |
| 724-925, gnl|bosTau2|chr23 (158275-158485) | |
| 724-925, gnl|Hg17|chr17 (37211926-37211730) | |
| 724-925, gnl|Mm7|chr11 (100517692-100517506) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cov (0.396458) | |
| eye (0.341006) | |
| nep (0.183925) | |
| cut (0.169924) | |
| pty (0.142714) | |
| ese (0.126502) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| eye (0.341006) | |
| nep (0.183925) | |
| cut (0.169924) | |
| pty (0.142714) | |
| ese (0.126502) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) |