Non-Coding RNA Search

Ss1.1-Mixn-0033n20.5

Sequence:


               
               CCGCGCGCAGCATCGGCGGGTCCGGTCCTCGCGCGCGCAGGCCCGAGGCGGCGACCCGGC
GCGGCCGCGGGCCGACGGGCGCTGCGGTCCGGACGGGCCCGGAGGGGCGAGGACGGGTGG
GTCCGCGCGGCCTCAGCTCAGTACGCAGCGTTCGCGCCGGCTCAGCTGCCGGCTCAGCTT
GCGACGCCGCTGCTCCAGGCCGCGTTCCAGGCGCTCGTCCTCCTCCAGGGCGATCCGCTC
CTTCTGGTCCAGGTTTCGGACCAGCTCGTCGCGCTGGTTCACCAGCGACACCAGCTCCTC
CAGCAGGAGCTGCTCCCGGTGCTGCTGCGCGGCCGTTTTCAGCCAGTCTTCAATGGCCAG
CATGGCCCGTAGCTCCCGGCTCAGCAGCTCGAACCTCCGCTCTAAGTCCTGCTCTTCGAT
GAGCAGCTGCAGCTGGTCCTGCCTCCGGATGAGCGCGTTCTTCTTGTTGACCAGTGTGAA
CCACTCCTGGATCAGCACCTCCTCCTGCAGCCGGTTGGCACCTGACTCCATGAGGCTCCT
CAGCTGCGTCTCCACCTCGGCCGCCCGTCCATCTATCTGCCTCTGTTCCTGTTCCAGGGC
CTGCAGCTCTGCGCACACGTACTGGCTTGTGTCCTGGAAACGTTGCAGCCCAGCCTCCTC
CCCCGGGCTTGGGGGTGGTTCCTCCGCAGCGGGAGTCCCACCAGGGGGCTGCTGTGGGGC
TGTGGCGGGGGCAGGGCCAGGGGCAGGGCTGGGGTCAGGGCTCACACCTTCCGCTGCCGC
GCCGGCCGCTCCGGCCGCTCCTGCTGCTCCCGAGTCCGTCTCGTCCACCGAGAAGGAGCT
GCTGTTCCGCAGCCGCGAGCGCCTCTGCTTCAGCAGGTCAGCGTCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGCGCAGCATCGGCGGGTCCGGTCCTCGCGCGCGCAGGCCCGAGGCGGCGACCCGGC
GCGGCCGCGGGCCGACGGGCGCTGCGGTCCGGACGGGCCCGGAGGGGCGAGGACGGGTGG
GTCCGCGCGGCCTCAGCTCAGTACGCAGCGTTCGCGCCGGCTCAGCTGCCGGCTCAGCTT
GCGACGCCGCTGCTCCAGGCCGCGTTCCAGGCGCTCGTCCTCCTCCAGGGCGATCCGCTC
CTTCTGGTCCAGGTTTCGGACCAGCTCGTCGCGCTGGTTCACCAGCGACACCAGCTCCTC
CAGCAGGAGCTGCTCCCGGTGCTGCTGCGCGGCCGTTTTCAGCCAGTCTTCAATGGCCAG
CATGGCCCGTAGCTCCCGGCTCAGCAGCTCGAACCTCCGCTCTAAGTCCTGCTCTTCGAT
GAGCAGCTGCAGCTGGTCCTGCCTCCGGATGAGCGCGTTCTTCTTGTTGACCAGTGTGAA
CCACTCCTGGATCAGCACCTCCTCCTGCAGCCGGTTGGCACCTGACTCCATGAGGCTCCT
CAGCTGCGTCTCCACCTCGGCCGCCCGTCCATCTATCTGCCTCTGTTCCTGTTCCAGGGC
CTGCAGCTCTGCGCACACGTACTGGCTTGTGTCCTGGAAACGTTGCAGCCCAGCCTCCTC
CCCCGGGCTTGGGGGTGGTTCCTCCGCAGCGGGAGTCCCACCAGGGGGCTGCTGTGGGGC
TGTGGCGGGGGCAGGGCCAGGGGCAGGGCTGGGGTCAGGGCTCACACCTTCCGCTGCCGC
GCCGGCCGCTCCGGCCGCTCCTGCTGCTCCCGAGTCCGTCTCGTCCACCGAGAAGGAGCT
GCTGTTCCGCAGCCGCGAGCGCCTCTGCTTCAGCAGGTCAGCGTCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8TB89_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TB89_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               234-349, - strand, RNAz p=0.985255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-349, - strand, RNAz p=0.985255

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               14-232, gnl|bosTau2|chr29 (37859805-37860018)
               

               
               14-232, gnl|Hg17|chr11 (65116451-65116250)
               

               
               14-232, gnl|Mm7|chr19 (5603051-5603231)
               


               
               234-349, gnl|bosTau2|chr29 (37860161-37860276)
               

               
               234-349, gnl|Hg17|chr11 (65116136-65116021)
               

               
               234-349, gnl|Mm7|chr19 (5603363-5603478)
               


               
               502-646, gnl|bosTau2|chr29 (37861903-37862046)
               

               
               502-646, gnl|canFam2|chr18 (54641815-54641684)
               

               
               502-646, gnl|danRer3|chrNA (95529733-95529860)
               

               
               502-646, gnl|fr1|chrUn (190833845-190833730)
               

               
               502-646, gnl|hg17|chr11 (65114135-65114266)
               

               
               502-646, gnl|Hg17|chr11 (65114277-65114133)
               

               
               502-646, gnl|mm7|chr19 (5605504-5605373)
               

               
               502-646, gnl|Mm7|chr19 (5605359-5605504)
               

               
               502-646, gnl|monDom2|scaffold_107 (3182754-3182623)
               

               
               502-646, gnl|oryCun1|scaffold_97847 (4771-4640)
               

               
               502-646, gnl|panTro1|chr9 (66359543-66359674)
               

               
               502-646, gnl|rheMac2|chr14 (8832600-8832469)
               

               
               502-646, gnl|rn3|chr1 (208489888-208489757)
               

               
               502-646, gnl|tetNig1|chr7 (9532860-9532729)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-232, gnl|bosTau2|chr29 (37859805-37860018)
               

               
               14-232, gnl|Hg17|chr11 (65116451-65116250)
               

               
               14-232, gnl|Mm7|chr19 (5603051-5603231)
               


               
               234-349, gnl|bosTau2|chr29 (37860161-37860276)
               

               
               234-349, gnl|Hg17|chr11 (65116136-65116021)
               

               
               234-349, gnl|Mm7|chr19 (5603363-5603478)
               


               
               502-646, gnl|bosTau2|chr29 (37861903-37862046)
               

               
               502-646, gnl|canFam2|chr18 (54641815-54641684)
               

               
               502-646, gnl|danRer3|chrNA (95529733-95529860)
               

               
               502-646, gnl|fr1|chrUn (190833845-190833730)
               

               
               502-646, gnl|hg17|chr11 (65114135-65114266)
               

               
               502-646, gnl|Hg17|chr11 (65114277-65114133)
               

               
               502-646, gnl|mm7|chr19 (5605504-5605373)
               

               
               502-646, gnl|Mm7|chr19 (5605359-5605504)
               

               
               502-646, gnl|monDom2|scaffold_107 (3182754-3182623)
               

               
               502-646, gnl|oryCun1|scaffold_97847 (4771-4640)
               

               
               502-646, gnl|panTro1|chr9 (66359543-66359674)
               

               
               502-646, gnl|rheMac2|chr14 (8832600-8832469)
               

               
               502-646, gnl|rn3|chr1 (208489888-208489757)
               

               
               502-646, gnl|tetNig1|chr7 (9532860-9532729)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	14-232, gnl\|bosTau2\|chr29 (37859805-37860018)
	14-232, gnl\|Hg17\|chr11 (65116451-65116250)
	14-232, gnl\|Mm7\|chr19 (5603051-5603231)

	234-349, gnl\|bosTau2\|chr29 (37860161-37860276)
	234-349, gnl\|Hg17\|chr11 (65116136-65116021)
	234-349, gnl\|Mm7\|chr19 (5603363-5603478)

	502-646, gnl\|bosTau2\|chr29 (37861903-37862046)
	502-646, gnl\|canFam2\|chr18 (54641815-54641684)
	502-646, gnl\|danRer3\|chrNA (95529733-95529860)
	502-646, gnl\|fr1\|chrUn (190833845-190833730)
	502-646, gnl\|hg17\|chr11 (65114135-65114266)
	502-646, gnl\|Hg17\|chr11 (65114277-65114133)
	502-646, gnl\|mm7\|chr19 (5605504-5605373)
	502-646, gnl\|Mm7\|chr19 (5605359-5605504)
	502-646, gnl\|monDom2\|scaffold_107 (3182754-3182623)
	502-646, gnl\|oryCun1\|scaffold_97847 (4771-4640)
	502-646, gnl\|panTro1\|chr9 (66359543-66359674)
	502-646, gnl\|rheMac2\|chr14 (8832600-8832469)
	502-646, gnl\|rn3\|chr1 (208489888-208489757)
	502-646, gnl\|tetNig1\|chr7 (9532860-9532729)