Non-Coding RNA Search

Ss1.1-Mixn-0033n23.5

Sequence:


               
               TTTTTTTTTTCGGGTTCTCGCTTGTAAACTTTATTGTAACTCTTCCGCCCTTTTCAGGCG
CAGACAACAGAACAAAGTATAGAGGAACAACAAAATATATAATTAGCCCTCCCTCCCCCC
AATAAAGCAATTCACGGATACAGGATACATTCTCTTCACAGTAAACCTAAGAACACTTTT
AACAATTGCCCACAGCGCGCATGCTAACTAAAGTAACCTCTTTTGAGAAACACTTAAGAC
AAAATTGTCAAACCAAAGCGGGGGGTGGGGGGGGGAGGAAAAGACAGAAGCCAGAGAAAA
AGCCAGCGAGCTAGGGAGGGCAGCGGGGAGAGAGGGTGGGAGGGGGAAATGAGGACGAGG
TGAGAGAGAGAGAGAGAGAGAGACAGAGAGAAAGCGAGAGAGGGAGACAGAAAGAATTAC
GGTGTGAATAGGCAGTTTCATGTTGTTGGGAGAACTTAGCAGAAATCGGTACCTCGGTCA
TTACAAAGAAGCACGTTCAAAGGAAAAAAAAAGACCATTGCACAAGGAGGCTTTTTACAT
GGGGCGGGGGCGTAGGGGGGGGCTCAGCCAGGCCGCAGCCGCTCACCCTCGCAGGGCGAG
GGAGTCCTTGCTTAAAATCCTTTTTTCTCCCCCTGCCCCCGGCCCCCCAAGAGAAGGGAA
GGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACT
GGCGCGGCGGGGACGCTGCGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCGGGTTCTCGCTTGTAAACTTTATTGTAACTCTTCCGCCCTTTTCAGGCG
CAGACAACAGAACAAAGTATAGAGGAACAACAAAATATATAATTAGCCCTCCCTCCCCCC
AATAAAGCAATTCACGGATACAGGATACATTCTCTTCACAGTAAACCTAAGAACACTTTT
AACAATTGCCCACAGCGCGCATGCTAACTAAAGTAACCTCTTTTGAGAAACACTTAAGAC
AAAATTGTCAAACCAAAGCGGGGGGTGGGGGGGGGAGGAAAAGACAGAAGCCAGAGAAAA
AGCCAGCGAGCTAGGGAGGGCAGCGGGGAGAGAGGGTGGGAGGGGGAAATGAGGACGAGG
TGAGAGAGAGAGAGAGAGAGAGACAGAGAGAAAGCGAGAGAGGGAGACAGAAAGAATTAC
GGTGTGAATAGGCAGTTTCATGTTGTTGGGAGAACTTAGCAGAAATCGGTACCTCGGTCA
TTACAAAGAAGCACGTTCAAAGGAAAAAAAAAGACCATTGCACAAGGAGGCTTTTTACAT
GGGGCGGGGGCGTAGGGGGGGGCTCAGCCAGGCCGCAGCCGCTCACCCTCGCAGGGCGAG
GGAGTCCTTGCTTAAAATCCTTTTTTCTCCCCCTGCCCCCGGCCCCCCAAGAGAAGGGAA
GGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACT
GGCGCGGCGGGGACGCTGCGGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               10-128, - strand, RNAz p=0.555061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-128, - strand, RNAz p=0.555061

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024016, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024016, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-744, gnl|bosTau2|chr19 (31229254-31230002)
               

               
               10-744, gnl|Hg17|chr17 (44044707-44045439)
               

               
               10-744, gnl|Mm7|chr11 (96394363-96393641)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-744, gnl|bosTau2|chr19 (31229254-31230002)
               

               
               10-744, gnl|Hg17|chr17 (44044707-44045439)
               

               
               10-744, gnl|Mm7|chr11 (96394363-96393641)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	10-744, gnl\|bosTau2\|chr19 (31229254-31230002)
	10-744, gnl\|Hg17\|chr17 (44044707-44045439)
	10-744, gnl\|Mm7\|chr11 (96394363-96393641)