Non-Coding RNA Search

Ss1.1-Mixn-0033o12.5

Sequence:


               
               CCCCCCCCGAGCAGGTGCAGGCCCGGGACGTCCGCTCACTGTAAACAGACACGTAGAGGA
TTTTTGGGAAAATGATCTATTTTAGAGTTTATTTGCCGATGTGCTTTTCACACACTTCCA
TGTGAAAGGGAGATCAGCAGAGGGAGACCGAGGCGGCGCGGCTTATTTTGAAGCCGGGCC
CTCCCTCGCCGTGGTGGAGCCCGCGGCCTCCCTGGACCGAGCCCGCGGCGCCTGCGGGGC
CGTCCACGTCCTCGCCCGCCACGATGCCGAGGCCATTCCCCGTTGTTTTTAAACCACCGT
TTTCTATATTAACGTGGCTGTGGCTGTTTGGCTGTCGCAGGCCACACAGGCGCGCTGAGC
AGGCCCGTCGGGGTTCCTCGGCGGGGCCGCCCGAGTCAGCCTGCGTCTTGCCGGGCGGCG
GGAGGGACCGTCGTGGCACGTCGCGTCCCTCTTGGCACACGGCCCACGGAGGTAAACATA
TGCATGTTTCCACAGGCTTTCTTTTGCCTTTTTTCTTTTTAACATGTTATTTATTTAACC
CTCCATTGTATGTTTTAAGTCTTTTTCTTTTTTTCTTTTTTTTACGGAAAGAAAAAGCTC
GTCAGAGTCTAACTGGCTGTTATTACTGTTAAATTTATGTTGTTTTGCAACTTAGAAACC
AGCTGCAGTATGGCCCACTTAATAAAACACCTGAAACAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCCGAGCAGGTGCAGGCCCGGGACGTCCGCTCACTGTAAACAGACACGTAGAGGA
TTTTTGGGAAAATGATCTATTTTAGAGTTTATTTGCCGATGTGCTTTTCACACACTTCCA
TGTGAAAGGGAGATCAGCAGAGGGAGACCGAGGCGGCGCGGCTTATTTTGAAGCCGGGCC
CTCCCTCGCCGTGGTGGAGCCCGCGGCCTCCCTGGACCGAGCCCGCGGCGCCTGCGGGGC
CGTCCACGTCCTCGCCCGCCACGATGCCGAGGCCATTCCCCGTTGTTTTTAAACCACCGT
TTTCTATATTAACGTGGCTGTGGCTGTTTGGCTGTCGCAGGCCACACAGGCGCGCTGAGC
AGGCCCGTCGGGGTTCCTCGGCGGGGCCGCCCGAGTCAGCCTGCGTCTTGCCGGGCGGCG
GGAGGGACCGTCGTGGCACGTCGCGTCCCTCTTGGCACACGGCCCACGGAGGTAAACATA
TGCATGTTTCCACAGGCTTTCTTTTGCCTTTTTTCTTTTTAACATGTTATTTATTTAACC
CTCCATTGTATGTTTTAAGTCTTTTTCTTTTTTTCTTTTTTTTACGGAAAGAAAAAGCTC
GTCAGAGTCTAACTGGCTGTTATTACTGTTAAATTTATGTTGTTTTGCAACTTAGAAACC
AGCTGCAGTATGGCCCACTTAATAAAACACCTGAAACAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               104-213, + strand, RNAz p=0.999649

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-213, + strand, RNAz p=0.999649

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               39-114, + strand, RNAmicro p=0.932149

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-114, + strand, RNAmicro p=0.932149

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

Help | Less info


               
               104-213, DB820205 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820205.1|), blast E-value=0, identity=100% 
               

               
               104-213, POSM0100006_F08 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190211.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               104-213, DB820205 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820205.1|), blast E-value=0, identity=100% 
               

               
               104-213, POSM0100006_F08 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190211.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_015213, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015213, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               27-363, gnl|bosTau2|chr15 (30650523-30650179)
               

               
               27-363, gnl|Hg17|chr11 (9117691-9117337)
               

               
               27-363, gnl|Mm7|chr7 (105809803-105809461)
               


               
               448-701, gnl|bosTau2|chr15 (30650037-30649782)
               

               
               448-701, gnl|Hg17|chr11 (9117193-9116948)
               

               
               448-701, gnl|Mm7|chr7 (105809297-105809050)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-363, gnl|bosTau2|chr15 (30650523-30650179)
               

               
               27-363, gnl|Hg17|chr11 (9117691-9117337)
               

               
               27-363, gnl|Mm7|chr7 (105809803-105809461)
               


               
               448-701, gnl|bosTau2|chr15 (30650037-30649782)
               

               
               448-701, gnl|Hg17|chr11 (9117193-9116948)
               

               
               448-701, gnl|Mm7|chr7 (105809297-105809050)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               fhi (0.678311)
               

               
               rec (0.346141)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.678311)
               

               
               rec (0.346141)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	104-213, DB820205 full-length enriched swine cDNA library, adult uterus Sus (dbj\|DB820205.1\|), blast E-value=0, identity=100%
	104-213, POSM0100006_F08 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190211.1\|), blast E-value=0, identity=100%

	27-363, gnl\|bosTau2\|chr15 (30650523-30650179)
	27-363, gnl\|Hg17\|chr11 (9117691-9117337)
	27-363, gnl\|Mm7\|chr7 (105809803-105809461)

	448-701, gnl\|bosTau2\|chr15 (30650037-30649782)
	448-701, gnl\|Hg17\|chr11 (9117193-9116948)
	448-701, gnl\|Mm7\|chr7 (105809297-105809050)

	fhi (0.678311)
	rec (0.346141)
	cga (0.279096)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	mas (0.210305)
	fcc (0.197785)
	hyp (0.142837)
	nmm (0.132802)
	eep (0.122564)
	jca (0.11396)