Ss1.1-Mixn-0034a10.5
|
TAAAAGGAAGGGGTGTGTCTGTGTGATTTAATAAGCATATTTAGTGAACAGTATTCCTAA
TTACTACTTTTTCCTGGCCTAATTTGGCTGCTAAAGAAATTTAAAGACTGGTTTTTCCAC
ATGCATTTCTAACAGATCCTACCAGAAATGAATACCAGAGCTTAAAACCTTTGTTGTCAG
TTTAAACATTACCTGTCCCCATAGTCGAATCAATAGGACACATTCCAATAAGGGCCTCAA
CTGTTTCCCTTTTATGCAGAGCTGAACTGCTGGCCCATCACCACCCTCCTTCCTTGGAGA
AGTGACTTGTCTCATCATTAATAACAACTAGAAAATTCATCACCACTGATGTAAAATTAG
TTTTAAGGTTACATAATACAAATATAATACTTTTTTGGGGAGTGTTTAGATTCTGTTCTT
TTTTATCTAAACTCAAAGTTAGGTTTTCGTTAACTATGTGAAGCAGAGCTTAAATTACCT
CAGAGAACCCACTATATGGTATTGCCTTCTAGAGAAAGTAGCTTTTACCTTTTTAGTCTT
TTTTGTTCTTATTCCTACAGTCATTCGACTTACTGTTGGAATTTACACTAAAGTATTTGA
GCAGTGAAAACTTGCACCATTTGGAAGTTATTTAGAAAAGAATTTGGACTGTTTAGATGC
ATTTTTGTAGTAAATGGTGATTTAAACACTATAAAATCTTTTTAAATATTTACATGTGAA
TCCAGCATCGCTTTTTACTTTGTAAATGGGGCCAGGGACAAAATCCAGATGTTCTCCCAT
TGTATTATCGCAGTATGAAATCTAAGTAATATAATATCTAAGGAAAACTAAACAAAAAAT
TATTTTACATTTTTTATATTTCTTCTTGCCTGTCTTCTACAACATGTAATTAGATCTTTC
TTCTTTGTTTCTGTAAATCGAATAGTTTGCCGCCGCCCCCCAACAACTTTTTCTACCTAT
GTTCTCTTGAAATACTGATTTGGCTTTTTTTTTTTTTTTTTTAATACTCAACAGCAGATG
GAAGTTCCAGAGCCAGGGATCAGACCCACGCCACAGCTGCAGCAATGCCAGATCCTTAAC
CCGATGTACCACAAAGTAACTTCTTGATTTGGCTTTTAAAGATATATTTTATCACAATTC
CAGAAATTAATGGAATGCTGTGTTGGATGAAACAGCTTGTTAAATCTTCTGACTGAAGCC
TTAGACATATTGGGCTATATGTAACCACCATTTGTACTATTTGCAATTAAATCAGATTCT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAAAAGGAAGGGGTGTGTCTGTGTGATTTAATAAGCATATTTAGTGAACAGTATTCCTAA
TTACTACTTTTTCCTGGCCTAATTTGGCTGCTAAAGAAATTTAAAGACTGGTTTTTCCAC
ATGCATTTCTAACAGATCCTACCAGAAATGAATACCAGAGCTTAAAACCTTTGTTGTCAG
TTTAAACATTACCTGTCCCCATAGTCGAATCAATAGGACACATTCCAATAAGGGCCTCAA
CTGTTTCCCTTTTATGCAGAGCTGAACTGCTGGCCCATCACCACCCTCCTTCCTTGGAGA
AGTGACTTGTCTCATCATTAATAACAACTAGAAAATTCATCACCACTGATGTAAAATTAG
TTTTAAGGTTACATAATACAAATATAATACTTTTTTGGGGAGTGTTTAGATTCTGTTCTT
TTTTATCTAAACTCAAAGTTAGGTTTTCGTTAACTATGTGAAGCAGAGCTTAAATTACCT
CAGAGAACCCACTATATGGTATTGCCTTCTAGAGAAAGTAGCTTTTACCTTTTTAGTCTT
TTTTGTTCTTATTCCTACAGTCATTCGACTTACTGTTGGAATTTACACTAAAGTATTTGA
GCAGTGAAAACTTGCACCATTTGGAAGTTATTTAGAAAAGAATTTGGACTGTTTAGATGC
ATTTTTGTAGTAAATGGTGATTTAAACACTATAAAATCTTTTTAAATATTTACATGTGAA
TCCAGCATCGCTTTTTACTTTGTAAATGGGGCCAGGGACAAAATCCAGATGTTCTCCCAT
TGTATTATCGCAGTATGAAATCTAAGTAATATAATATCTAAGGAAAACTAAACAAAAAAT
TATTTTACATTTTTTATATTTCTTCTTGCCTGTCTTCTACAACATGTAATTAGATCTTTC
TTCTTTGTTTCTGTAAATCGAATAGTTTGCCGCCGCCCCCCAACAACTTTTTCTACCTAT
GTTCTCTTGAAATACTGATTTGGCTTTTTTTTTTTTTTTTTTAATACTCAACAGCAGATG
GAAGTTCCAGAGCCAGGGATCAGACCCACGCCACAGCTGCAGCAATGCCAGATCCTTAAC
CCGATGTACCACAAAGTAACTTCTTGATTTGGCTTTTAAAGATATATTTTATCACAATTC
CAGAAATTAATGGAATGCTGTGTTGGATGAAACAGCTTGTTAAATCTTCTGACTGAAGCC
TTAGACATATTGGGCTATATGTAACCACCATTTGTACTATTTGCAATTAAATCAGATTCT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
400-988, gnl|bosTau2|chr13 (59111613-59112242) |
|
400-988, gnl|Hg17|chr20 (48983346-48982710) |
|
400-988, gnl|Mm7|chr2 (168001685-168000893) |
| |
|
1105-1260, gnl|bosTau2|chr13 (59112230-59112383) |
|
1105-1260, gnl|canFam2|chr24 (40229401-40229987) |
|
1105-1260, gnl|hg17|chr20 (48982486-48983044) |
|
1105-1260, gnl|Hg17|chr20 (48982722-48982579) |
|
1105-1260, gnl|loxAfr1|scaffold_114708 (3817-3307) |
|
1105-1260, gnl|mm7|chr2 (168000750-168001214) |
|
1105-1260, gnl|monDom2|scaffold_1 (162828698-162829268) |
|
1105-1260, gnl|oryCun1|scaffold_204453 (49784-50303) |
|
1105-1260, gnl|panTro1|chr21 (51721163-51721694) |
|
1105-1260, gnl|rheMac2|chr10 (13528125-13527565) |
|
1105-1260, gnl|rn3|chr3 (159279162-159279610) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
400-988, gnl|bosTau2|chr13 (59111613-59112242) |
|
400-988, gnl|Hg17|chr20 (48983346-48982710) |
|
400-988, gnl|Mm7|chr2 (168001685-168000893) |
| |
|
1105-1260, gnl|bosTau2|chr13 (59112230-59112383) |
|
1105-1260, gnl|canFam2|chr24 (40229401-40229987) |
|
1105-1260, gnl|hg17|chr20 (48982486-48983044) |
|
1105-1260, gnl|Hg17|chr20 (48982722-48982579) |
|
1105-1260, gnl|loxAfr1|scaffold_114708 (3817-3307) |
|
1105-1260, gnl|mm7|chr2 (168000750-168001214) |
|
1105-1260, gnl|monDom2|scaffold_1 (162828698-162829268) |
|
1105-1260, gnl|oryCun1|scaffold_204453 (49784-50303) |
|
1105-1260, gnl|panTro1|chr21 (51721163-51721694) |
|
1105-1260, gnl|rheMac2|chr10 (13528125-13527565) |
|
1105-1260, gnl|rn3|chr3 (159279162-159279610) |
|
cbe (0.478469) |
|
tbr (0.308356) |
|
cmu (0.186393) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
kid (0.129735) |
|
tra (0.123092) |
|
med (0.116252) |
|
jca (0.11396) |
|
cbe (0.478469) |
|
tbr (0.308356) |
|
cmu (0.186393) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
kid (0.129735) |
|
tra (0.123092) |
|
med (0.116252) |
|
jca (0.11396) |
