Non-Coding RNA Search

Ss1.1-Mixn-0034b10.5

Sequence:


               
               CCGAGCAGCAGCTGGAGCTGAACCGCGAGTCGGTGCGCGCGCCCCCGAACAGAACCATCT
TCGACAGCGACCTGATGGACAGCGCCATGCTGGGCGGCCCCTGTCCCCCCAGCAGTAACT
CGGGCATCAGCGCCACGTGCTACGGGGGCGGCGGGCGCATGGAGGGCCCGCCCCCCACCT
ACAGCGAGGTCATCGGGCACTACCCCGGCGCCTCCACCTTCCAGCACCAGCAGACCAGCG
GGCCGCCCTCCTTGCTGGAGGGGACCCGGCTGCACCCCGCACACATCGCCCCGCTGGAGA
GCACGGCGGCCTGGGGCAAAGAGAAGGATAAACAGAAGGGCCACCCCCTCTAGGAGTCCC
GGGGCGGGGGGCCAGGCCGGGGCAGCAGTAGTGAAACAGCAAAACACTCCGCACTTCTTG
AAAGAAAAGAGAGAGGAGGACGGCGACACACAGAAAATTTGAAGTAACCATCCTCTCCCA
CCTCTCTGTGTATAAATATTTACATGTTCTGTCTGGTCTGAATGCACAAGCTAAGAAAGC
TTGCAAAACAAAACAAAAAAACGAAAAGAAAAAAACAAAAAAAACAAACCCATGTTTCTT
TGTTGAGCTGTGTCTTGAAGGCAAAAGAGAAAAAAAAAAACTACACTAGTCCGGTTTCTA
GTTGAGCTGCGTGCGTGAATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGCAGCAGCTGGAGCTGAACCGCGAGTCGGTGCGCGCGCCCCCGAACAGAACCATCT
TCGACAGCGACCTGATGGACAGCGCCATGCTGGGCGGCCCCTGTCCCCCCAGCAGTAACT
CGGGCATCAGCGCCACGTGCTACGGGGGCGGCGGGCGCATGGAGGGCCCGCCCCCCACCT
ACAGCGAGGTCATCGGGCACTACCCCGGCGCCTCCACCTTCCAGCACCAGCAGACCAGCG
GGCCGCCCTCCTTGCTGGAGGGGACCCGGCTGCACCCCGCACACATCGCCCCGCTGGAGA
GCACGGCGGCCTGGGGCAAAGAGAAGGATAAACAGAAGGGCCACCCCCTCTAGGAGTCCC
GGGGCGGGGGGCCAGGCCGGGGCAGCAGTAGTGAAACAGCAAAACACTCCGCACTTCTTG
AAAGAAAAGAGAGAGGAGGACGGCGACACACAGAAAATTTGAAGTAACCATCCTCTCCCA
CCTCTCTGTGTATAAATATTTACATGTTCTGTCTGGTCTGAATGCACAAGCTAAGAAAGC
TTGCAAAACAAAACAAAAAAACGAAAAGAAAAAAACAAAAAAAACAAACCCATGTTTCTT
TGTTGAGCTGTGTCTTGAAGGCAAAAGAGAAAAAAAAAAACTACACTAGTCCGGTTTCTA
GTTGAGCTGCGTGCGTGAATGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57104742|ref|XP_543070.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57104742|ref|XP_543070.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-422, - strand, RNAz p=0.803437

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-422, - strand, RNAz p=0.803437

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-240, gnl|bosTau2|chr24 (30454532-30454772)
               

               
               3-240, gnl|canFam2|chr24 (45584152-45584310)
               

               
               3-240, gnl|danRer3|chr16 (31554810-31554643)
               

               
               3-240, gnl|dasNov1|scaffold_127495 (4121-4266)
               

               
               3-240, gnl|echTel1|scaffold_286616 (2713-2555)
               

               
               3-240, gnl|galGal2|chr20 (11045564-11045406)
               

               
               3-240, gnl|Hg17|chr18 (13635318-13635558)
               

               
               3-240, gnl|hg17|chr20 (55660629-55660784)
               

               
               3-240, gnl|Mm7|chr18 (68646496-68646736)
               

               
               3-240, gnl|mm7|chr2 (172972309-172972464)
               

               
               3-240, gnl|monDom2|scaffold_1 (171586370-171586528)
               

               
               3-240, gnl|oryCun1|scaffold_200190 (125827-125988)
               

               
               3-240, gnl|panTro1|chr21 (58588390-58588545)
               

               
               3-240, gnl|rheMac2|chr10 (6866217-6866062)
               

               
               3-240, gnl|rn3|chr3 (164004219-164004377)
               

               
               3-240, gnl|tetNig1|chr8 (10287166-10287024)
               

               
               3-240, gnl|xenTro1|scaffold_220 (1226852-1226694)
               


               
               266-684, gnl|bosTau2|chr13 (39840886-39841309)
               

               
               266-684, gnl|Hg17|chr20 (55660549-55660201)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-240, gnl|bosTau2|chr24 (30454532-30454772)
               

               
               3-240, gnl|canFam2|chr24 (45584152-45584310)
               

               
               3-240, gnl|danRer3|chr16 (31554810-31554643)
               

               
               3-240, gnl|dasNov1|scaffold_127495 (4121-4266)
               

               
               3-240, gnl|echTel1|scaffold_286616 (2713-2555)
               

               
               3-240, gnl|galGal2|chr20 (11045564-11045406)
               

               
               3-240, gnl|Hg17|chr18 (13635318-13635558)
               

               
               3-240, gnl|hg17|chr20 (55660629-55660784)
               

               
               3-240, gnl|Mm7|chr18 (68646496-68646736)
               

               
               3-240, gnl|mm7|chr2 (172972309-172972464)
               

               
               3-240, gnl|monDom2|scaffold_1 (171586370-171586528)
               

               
               3-240, gnl|oryCun1|scaffold_200190 (125827-125988)
               

               
               3-240, gnl|panTro1|chr21 (58588390-58588545)
               

               
               3-240, gnl|rheMac2|chr10 (6866217-6866062)
               

               
               3-240, gnl|rn3|chr3 (164004219-164004377)
               

               
               3-240, gnl|tetNig1|chr8 (10287166-10287024)
               

               
               3-240, gnl|xenTro1|scaffold_220 (1226852-1226694)
               


               
               266-684, gnl|bosTau2|chr13 (39840886-39841309)
               

               
               266-684, gnl|Hg17|chr20 (55660549-55660201)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               gul (0.532765)
               

               
               cmu (0.372787)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               cmu (0.372787)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

	3-240, gnl\|bosTau2\|chr24 (30454532-30454772)
	3-240, gnl\|canFam2\|chr24 (45584152-45584310)
	3-240, gnl\|danRer3\|chr16 (31554810-31554643)
	3-240, gnl\|dasNov1\|scaffold_127495 (4121-4266)
	3-240, gnl\|echTel1\|scaffold_286616 (2713-2555)
	3-240, gnl\|galGal2\|chr20 (11045564-11045406)
	3-240, gnl\|Hg17\|chr18 (13635318-13635558)
	3-240, gnl\|hg17\|chr20 (55660629-55660784)
	3-240, gnl\|Mm7\|chr18 (68646496-68646736)
	3-240, gnl\|mm7\|chr2 (172972309-172972464)
	3-240, gnl\|monDom2\|scaffold_1 (171586370-171586528)
	3-240, gnl\|oryCun1\|scaffold_200190 (125827-125988)
	3-240, gnl\|panTro1\|chr21 (58588390-58588545)
	3-240, gnl\|rheMac2\|chr10 (6866217-6866062)
	3-240, gnl\|rn3\|chr3 (164004219-164004377)
	3-240, gnl\|tetNig1\|chr8 (10287166-10287024)
	3-240, gnl\|xenTro1\|scaffold_220 (1226852-1226694)

	266-684, gnl\|bosTau2\|chr13 (39840886-39841309)
	266-684, gnl\|Hg17\|chr20 (55660549-55660201)

	gul (0.532765)
	cmu (0.372787)
	cbe (0.239234)
	aor (0.195274)
	pty (0.142714)
	ret (0.128733)