Ss1.1-Mixn-0034h12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAACATTTGAGAGAGGGCTGGAACTACATGCCAAAGTCACAATTTTTGCAGAAGGCTG CCACGGACACCTGGCCAAGCAGCTGTACAAGAAGTTTGACCTGAGGGCCAACTGTGAGCC CCAGACCTACGGGATCGGGCTAAAGGAGCTATGGGTTATTGATGAGAAGAAGTGGAAGCC TGGGAGAGTGGATCACACTGTGGGCTGGCCCCTGGACAGACACACTTATGGTGGCTCTTT CCTCTACCATCTCAATGAAGGGGAACCTCTCTTAGCTCTTGGCTTTGTGGTTGGTCTAGA CTATCAAAATCCATACCTAAGTCCATTTAGAGAGTTCCAGAGGTGGAAACACCACCCCAG CATCAAGCCAACATTGGAAGGTGGTAAAAGGATTGCATATGGAGCAAGAGCCCTCAACGA AGGTGGCTTTCAGTCTATACCAAAACTCACTTTTCCTGGGGGCTTACTGATTGGGTGCAG CCCTGGTTTCATGAATGTTCCCAAGATCAAAGGGACCCACACAGCAATGAAAAGTGGAAT TTTGGCAGCAGAATCTATTTTCAATCAACTAACTAGTGAAAATCTCCAATCGAAGACAAT AGGACTCCATGTAACTGAGTATGAGGACAACTTGAAGAACTCATGGGTGTGGAAGGAGCT CTACTCCGTCAGAAACATCAGACCATCTTGCCACGGGATCCTGGGTGTATATGGAGGGAT GATTTACACTGGAATCTTCTACTGGATATTCAGAGGGATGGAGCCATGGACTCTGAAACA TAAAGGTTCTGACTCTGATCAGCTCAAGCCAGCCAAGGACTGCACCCCTATTGAGTATCC AAAACCAGACGGACAGATCAGTTTTGACCTCCTGTCGTCTGTGGCTCTGAGCGGTACTAA CCATGAACATGACCAGCCAGCACATTTAACCCTGAAGGATGACAGTGTACCTGTGAACAG AAACCTGTCCATATACGACGGGCCTGAGCAGCGATTCTGCCCTGCAGGAGTCTATGAATT TGTACCTTTGGAACAAGGTGATGGATTTCGGCTACAGATAAATGCTCAAAACTGTGTGCA CTGTAAAACATGTGATATTAAGGACCCAAGTCAGAATATTAACTGGGTGGTGCCTGAAGG TGGTGGAGGCCCTGCGTACAATGGAATGTAAGCTGCAGTTGGCCTCACCTGTGCCTGTTT CTCTCAAGTGGACAGCAAGCCAACTTCAAATGTTTGGAAGTTCACAAGTGTCAAAATACT TTACAGCATATTACTGACCAGAATGTTCGTAAAATAATTATCAGCAAAATAATTTTATAC TGTACCTAAAATTGTCCCATAAATAATTATGAATATTTCTCTTAAATAAAGCTTTATTAA GTGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAACATTTGAGAGAGGGCTGGAACTACATGCCAAAGTCACAATTTTTGCAGAAGGCTG CCACGGACACCTGGCCAAGCAGCTGTACAAGAAGTTTGACCTGAGGGCCAACTGTGAGCC CCAGACCTACGGGATCGGGCTAAAGGAGCTATGGGTTATTGATGAGAAGAAGTGGAAGCC TGGGAGAGTGGATCACACTGTGGGCTGGCCCCTGGACAGACACACTTATGGTGGCTCTTT CCTCTACCATCTCAATGAAGGGGAACCTCTCTTAGCTCTTGGCTTTGTGGTTGGTCTAGA CTATCAAAATCCATACCTAAGTCCATTTAGAGAGTTCCAGAGGTGGAAACACCACCCCAG CATCAAGCCAACATTGGAAGGTGGTAAAAGGATTGCATATGGAGCAAGAGCCCTCAACGA AGGTGGCTTTCAGTCTATACCAAAACTCACTTTTCCTGGGGGCTTACTGATTGGGTGCAG CCCTGGTTTCATGAATGTTCCCAAGATCAAAGGGACCCACACAGCAATGAAAAGTGGAAT TTTGGCAGCAGAATCTATTTTCAATCAACTAACTAGTGAAAATCTCCAATCGAAGACAAT AGGACTCCATGTAACTGAGTATGAGGACAACTTGAAGAACTCATGGGTGTGGAAGGAGCT CTACTCCGTCAGAAACATCAGACCATCTTGCCACGGGATCCTGGGTGTATATGGAGGGAT GATTTACACTGGAATCTTCTACTGGATATTCAGAGGGATGGAGCCATGGACTCTGAAACA TAAAGGTTCTGACTCTGATCAGCTCAAGCCAGCCAAGGACTGCACCCCTATTGAGTATCC AAAACCAGACGGACAGATCAGTTTTGACCTCCTGTCGTCTGTGGCTCTGAGCGGTACTAA CCATGAACATGACCAGCCAGCACATTTAACCCTGAAGGATGACAGTGTACCTGTGAACAG AAACCTGTCCATATACGACGGGCCTGAGCAGCGATTCTGCCCTGCAGGAGTCTATGAATT TGTACCTTTGGAACAAGGTGATGGATTTCGGCTACAGATAAATGCTCAAAACTGTGTGCA CTGTAAAACATGTGATATTAAGGACCCAAGTCAGAATATTAACTGGGTGGTGCCTGAAGG TGGTGGAGGCCCTGCGTACAATGGAATGTAAGCTGCAGTTGGCCTCACCTGTGCCTGTTT CTCTCAAGTGGACAGCAAGCCAACTTCAAATGTTTGGAAGTTCACAAGTGTCAAAATACT TTACAGCATATTACTGACCAGAATGTTCGTAAAATAATTATCAGCAAAATAATTTTATAC TGTACCTAAAATTGTCCCATAAATAATTATGAATATTTCTCTTAAATAAAGCTTTATTAA GTGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 284-402, + strand, RNAz p=0.583735 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 284-402, + strand, RNAz p=0.583735 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr17 (21875345-21875495) | |
| 1-151, gnl|canFam2|chr15 (58791124-58791251) | |
| 1-151, gnl|danRer3|chrUn (125359766-125359638) | |
| 1-151, gnl|dasNov1|scaffold_8465 (19391-19518) | |
| 1-151, gnl|echTel1|scaffold_285812 (21011-21140) | |
| 1-151, gnl|fr1|chrUn (254064553-254064676) | |
| 1-151, gnl|galGal2|chr4 (22510914-22511041) | |
| 1-151, gnl|hg17|chr4 (159974238-159974365) | |
| 1-151, gnl|Hg17|chr4 (159974253-159974403) | |
| 1-151, gnl|loxAfr1|scaffold_264 (59879-59751) | |
| 1-151, gnl|mm7|chr3 (79720198-79720071) | |
| 1-151, gnl|Mm7|chr3 (79720181-79720031) | |
| 1-151, gnl|monDom2|scaffold_9 (30993226-30993353) | |
| 1-151, gnl|oryCun1|scaffold_149948 (15693-15567) | |
| 1-151, gnl|panTro1|chr3 (177404388-177404515) | |
| 1-151, gnl|rheMac2|chr5 (150867814-150867941) | |
| 1-151, gnl|rn3|chr2 (170968028-170967901) | |
| 1-151, gnl|tetNig1|chr20 (1546281-1546397) | |
| 1-151, gnl|xenTro1|scaffold_231 (904711-904585) | |
| 284-433, gnl|bosTau2|chr17 (21878494-21878643) | |
| 284-433, gnl|Hg17|chr4 (159977738-159977887) | |
| 284-433, gnl|Mm7|chr3 (79717095-79716946) | |
| 598-787, gnl|bosTau2|chr17 (21883524-21883713) | |
| 598-787, gnl|canFam2|chr15 (58798651-58798871) | |
| 598-787, gnl|danRer3|chrUn (125347445-125347235) | |
| 598-787, gnl|dasNov1|scaffold_8465 (28408-28628) | |
| 598-787, gnl|echTel1|scaffold_281984 (3497-3278) | |
| 598-787, gnl|fr1|chrUn (254066308-254066516) | |
| 598-787, gnl|galGal2|chr4 (22518142-22518360) | |
| 598-787, gnl|hg17|chr4 (159984919-159985139) | |
| 598-787, gnl|Hg17|chr4 (159984942-159985130) | |
| 598-787, gnl|loxAfr1|scaffold_264 (50712-50492) | |
| 598-787, gnl|mm7|chr3 (79710874-79710655) | |
| 598-787, gnl|Mm7|chr3 (79710850-79710662) | |
| 598-787, gnl|monDom2|scaffold_9 (31002390-31002616) | |
| 598-787, gnl|oryCun1|scaffold_149948 (8272-8052) | |
| 598-787, gnl|panTro1|chr3 (177415116-177415336) | |
| 598-787, gnl|rheMac2|chr5 (150879079-150879298) | |
| 598-787, gnl|rn3|chr2 (170960748-170960531) | |
| 598-787, gnl|tetNig1|chr20 (1547644-1547839) | |
| 598-787, gnl|xenTro1|scaffold_231 (901267-901051) | |
| 994-1383, gnl|bosTau2|chr17 (21885717-21886088) | |
| 994-1383, gnl|Hg17|chr4 (159987106-159987481) | |
| 994-1383, gnl|Mm7|chr3 (79709228-79708838) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr17 (21875345-21875495) | |
| 1-151, gnl|canFam2|chr15 (58791124-58791251) | |
| 1-151, gnl|danRer3|chrUn (125359766-125359638) | |
| 1-151, gnl|dasNov1|scaffold_8465 (19391-19518) | |
| 1-151, gnl|echTel1|scaffold_285812 (21011-21140) | |
| 1-151, gnl|fr1|chrUn (254064553-254064676) | |
| 1-151, gnl|galGal2|chr4 (22510914-22511041) | |
| 1-151, gnl|hg17|chr4 (159974238-159974365) | |
| 1-151, gnl|Hg17|chr4 (159974253-159974403) | |
| 1-151, gnl|loxAfr1|scaffold_264 (59879-59751) | |
| 1-151, gnl|mm7|chr3 (79720198-79720071) | |
| 1-151, gnl|Mm7|chr3 (79720181-79720031) | |
| 1-151, gnl|monDom2|scaffold_9 (30993226-30993353) | |
| 1-151, gnl|oryCun1|scaffold_149948 (15693-15567) | |
| 1-151, gnl|panTro1|chr3 (177404388-177404515) | |
| 1-151, gnl|rheMac2|chr5 (150867814-150867941) | |
| 1-151, gnl|rn3|chr2 (170968028-170967901) | |
| 1-151, gnl|tetNig1|chr20 (1546281-1546397) | |
| 1-151, gnl|xenTro1|scaffold_231 (904711-904585) | |
| 284-433, gnl|bosTau2|chr17 (21878494-21878643) | |
| 284-433, gnl|Hg17|chr4 (159977738-159977887) | |
| 284-433, gnl|Mm7|chr3 (79717095-79716946) | |
| 598-787, gnl|bosTau2|chr17 (21883524-21883713) | |
| 598-787, gnl|canFam2|chr15 (58798651-58798871) | |
| 598-787, gnl|danRer3|chrUn (125347445-125347235) | |
| 598-787, gnl|dasNov1|scaffold_8465 (28408-28628) | |
| 598-787, gnl|echTel1|scaffold_281984 (3497-3278) | |
| 598-787, gnl|fr1|chrUn (254066308-254066516) | |
| 598-787, gnl|galGal2|chr4 (22518142-22518360) | |
| 598-787, gnl|hg17|chr4 (159984919-159985139) | |
| 598-787, gnl|Hg17|chr4 (159984942-159985130) | |
| 598-787, gnl|loxAfr1|scaffold_264 (50712-50492) | |
| 598-787, gnl|mm7|chr3 (79710874-79710655) | |
| 598-787, gnl|Mm7|chr3 (79710850-79710662) | |
| 598-787, gnl|monDom2|scaffold_9 (31002390-31002616) | |
| 598-787, gnl|oryCun1|scaffold_149948 (8272-8052) | |
| 598-787, gnl|panTro1|chr3 (177415116-177415336) | |
| 598-787, gnl|rheMac2|chr5 (150879079-150879298) | |
| 598-787, gnl|rn3|chr2 (170960748-170960531) | |
| 598-787, gnl|tetNig1|chr20 (1547644-1547839) | |
| 598-787, gnl|xenTro1|scaffold_231 (901267-901051) | |
| 994-1383, gnl|bosTau2|chr17 (21885717-21886088) | |
| 994-1383, gnl|Hg17|chr4 (159987106-159987481) | |
| 994-1383, gnl|Mm7|chr3 (79709228-79708838) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| nms (0.855432) | |
| tbr (0.770891) | |
| mgm (0.541028) | |
| lyg (0.532411) | |
| fat (0.442282) | |
| hea (0.408998) | |
| ste (0.405625) | |
| thg (0.380373) | |
| mcp (0.341297) | |
| lun (0.300978) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ski (0.146735) | |
| csk (0.140746) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.855432) | |
| tbr (0.770891) | |
| mgm (0.541028) | |
| lyg (0.532411) | |
| fat (0.442282) | |
| hea (0.408998) | |
| ste (0.405625) | |
| thg (0.380373) | |
| mcp (0.341297) | |
| lun (0.300978) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ski (0.146735) | |
| csk (0.140746) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |