Ss1.1-Mixn-0034i03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAAGATGCTGGCAGTAGACCCTGAAGCACCCACGGAGGAGGAGCACGCGCAGCGCGC GGTCACGAAGCCGCGCTACATGCAATGGCGAGAAGGCATTAGCTCAAGCACCACGCTCGG CTTCCGCATCGAAGGCATCAAGAAAGCCGATGGCTCTTGCAGCACCGATTTCAAGACGAC GAGAAGCCGGGAACAGGTGATTAGCGTCTTCGAGGAGTTCGTGCAAGGAGATGCAGAAGT GCTGAGGAGGTATCTGAACCGGCTGCAGCAGATCCGGGACACCCTGGAGGTCTCTGAGTT CTTTAGGAGGCACGAGGTGATTGGCAGCTCGCTCCTCTTCGTGCATGATCACTGCCATCG TGCAGGCGTATGGCTCATCGACTTCGGCAAGACCACACCTCTCCCGGACGGCCAGACCCT GGACCACCGACGGCCCTGGGAGGAGGGCAACCGAGAGGATGGCTACTTGCTGGGGCTGGA CAATCTCATTGGCATCTTGGCCAGCCTGGCTGAGAGATGAGGCTGGGCCCTGTCTCCGTG GACCTGAGGGTCTGACAGATGGACCTGCGCCTGCATCCCTGCCATGCATGCAGGCGAGAG ACTGAAACCCCGCAGTGCGGGGTGGTTCATACGGTCCTGCAGGGCCAGGTGCCAATCAGT ATGGGATACACTGCACGCACAGGGCCTGGCTCCCATACAAGCCCCAGTGCTCCCAGAGCC TATGACACTAATGGGGAGGCGGGGTAGAGTGGGACAGATGGCTTCTTCCTTAGCCCAGCT CTTCTGAGGGGGCTCCATACCTCTCCAGAGAAGCCAGATAATGAATTATTTCACAGGCAC TAGATTTATTGGTCTAACCTCCCACACTACAATGGACTCCCCTTCCCAATAAAACTGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAAGATGCTGGCAGTAGACCCTGAAGCACCCACGGAGGAGGAGCACGCGCAGCGCGC GGTCACGAAGCCGCGCTACATGCAATGGCGAGAAGGCATTAGCTCAAGCACCACGCTCGG CTTCCGCATCGAAGGCATCAAGAAAGCCGATGGCTCTTGCAGCACCGATTTCAAGACGAC GAGAAGCCGGGAACAGGTGATTAGCGTCTTCGAGGAGTTCGTGCAAGGAGATGCAGAAGT GCTGAGGAGGTATCTGAACCGGCTGCAGCAGATCCGGGACACCCTGGAGGTCTCTGAGTT CTTTAGGAGGCACGAGGTGATTGGCAGCTCGCTCCTCTTCGTGCATGATCACTGCCATCG TGCAGGCGTATGGCTCATCGACTTCGGCAAGACCACACCTCTCCCGGACGGCCAGACCCT GGACCACCGACGGCCCTGGGAGGAGGGCAACCGAGAGGATGGCTACTTGCTGGGGCTGGA CAATCTCATTGGCATCTTGGCCAGCCTGGCTGAGAGATGAGGCTGGGCCCTGTCTCCGTG GACCTGAGGGTCTGACAGATGGACCTGCGCCTGCATCCCTGCCATGCATGCAGGCGAGAG ACTGAAACCCCGCAGTGCGGGGTGGTTCATACGGTCCTGCAGGGCCAGGTGCCAATCAGT ATGGGATACACTGCACGCACAGGGCCTGGCTCCCATACAAGCCCCAGTGCTCCCAGAGCC TATGACACTAATGGGGAGGCGGGGTAGAGTGGGACAGATGGCTTCTTCCTTAGCCCAGCT CTTCTGAGGGGGCTCCATACCTCTCCAGAGAAGCCAGATAATGAATTATTTCACAGGCAC TAGATTTATTGGTCTAACCTCCCACACTACAATGGACTCCCCTTCCCAATAAAACTGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 549-664, - strand, RNAz p=0.511906 | |
| 775-900, + strand, RNAz p=0.976939 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 549-664, - strand, RNAz p=0.511906 | |
| 775-900, + strand, RNAz p=0.976939 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002220, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr10 (23012215-23012356) | |
| 1-142, gnl|canFam2|chr30 (11532619-11532844) | |
| 1-142, gnl|danRer3|chr17 (32742782-32742573) | |
| 1-142, gnl|dasNov1|scaffold_3567 (66603-66831) | |
| 1-142, gnl|echTel1|scaffold_307670 (1499-1275) | |
| 1-142, gnl|fr1|chrUn (183718861-183718643) | |
| 1-142, gnl|galGal2|chr5 (21962453-21962670) | |
| 1-142, gnl|hg17|chr15 (39581479-39581705) | |
| 1-142, gnl|Hg17|chr15 (39581550-39581691) | |
| 1-142, gnl|loxAfr1|scaffold_7974 (94037-93811) | |
| 1-142, gnl|mm7|chr2 (119490515-119490740) | |
| 1-142, gnl|Mm7|chr2 (119490585-119490726) | |
| 1-142, gnl|monDom2|scaffold_12 (621331-621103) | |
| 1-142, gnl|oryCun1|scaffold_152681 (5543-5321) | |
| 1-142, gnl|panTro1|chr16 (39552356-39552582) | |
| 1-142, gnl|rheMac2|chr7 (19891720-19891946) | |
| 1-142, gnl|rn3|chr3 (106161018-106161243) | |
| 1-142, gnl|tetNig1|chr10 (5805295-5805505) | |
| 1-142, gnl|xenTro1|scaffold_117 (2157924-2157709) | |
| 315-900, gnl|bosTau2|chr10 (23013151-23013748) | |
| 315-900, gnl|Hg17|chr15 (39582451-39583034) | |
| 315-900, gnl|Mm7|chr2 (119491511-119492096) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr10 (23012215-23012356) | |
| 1-142, gnl|canFam2|chr30 (11532619-11532844) | |
| 1-142, gnl|danRer3|chr17 (32742782-32742573) | |
| 1-142, gnl|dasNov1|scaffold_3567 (66603-66831) | |
| 1-142, gnl|echTel1|scaffold_307670 (1499-1275) | |
| 1-142, gnl|fr1|chrUn (183718861-183718643) | |
| 1-142, gnl|galGal2|chr5 (21962453-21962670) | |
| 1-142, gnl|hg17|chr15 (39581479-39581705) | |
| 1-142, gnl|Hg17|chr15 (39581550-39581691) | |
| 1-142, gnl|loxAfr1|scaffold_7974 (94037-93811) | |
| 1-142, gnl|mm7|chr2 (119490515-119490740) | |
| 1-142, gnl|Mm7|chr2 (119490585-119490726) | |
| 1-142, gnl|monDom2|scaffold_12 (621331-621103) | |
| 1-142, gnl|oryCun1|scaffold_152681 (5543-5321) | |
| 1-142, gnl|panTro1|chr16 (39552356-39552582) | |
| 1-142, gnl|rheMac2|chr7 (19891720-19891946) | |
| 1-142, gnl|rn3|chr3 (106161018-106161243) | |
| 1-142, gnl|tetNig1|chr10 (5805295-5805505) | |
| 1-142, gnl|xenTro1|scaffold_117 (2157924-2157709) | |
| 315-900, gnl|bosTau2|chr10 (23013151-23013748) | |
| 315-900, gnl|Hg17|chr15 (39582451-39583034) | |
| 315-900, gnl|Mm7|chr2 (119491511-119492096) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| fcc (0.197785) | |
| eje (0.0988338) |