Ss1.1-Mixn-0034k08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGAGCGGAGGCCTCGTGCCCTAACGGCCATCGCGGTGGCCGCGGTGGCATCCCGGTGC CCTCCTCAGTGCAGAAGCTGCTGAAAAATGGCAGAAGAAGTGGTGGTAGTAGCCAAATTT GATTATGTTGCACAACAAGAACAAGAGCTTGACATCAAGAAGAATGAGAGACTATGGCTT TTGGATGATTCTAAGTCCTGGTGGCGAGTACGAAATTCGATGAATAAAACAGGTTTTGTG CCTTCTAACTATGTGGAAAGGAAAAACAGTGCCCGGAAAGCATCTATTGTAAAAAACCTA AAAGATACCTTAGGCATTGGAAAAGTGAAAAGAAAACATAGTGTGCCAGATTCTGCATCT CCTGCTGATGAAAGCTTTGTTGACCCAGGGGAACGTCTCTATGATCTCAACATGCCTGCT TATGTGAAATTTAACTACATGGCAGAGAGAGAGGATGAATTGTCATTGATAAAAGGGACG AAGGTGATTGTCATGGAGAAATGCAGTGATGGTTGGTGGCGCGGTAGCTACAATGGACAA ATTGGATGGTTTCCTTCAAACTATGTAACTGAGGAAGGTGACAGTCCTTTGGGTGACCAT GTGGGTTCCTTGTCAGAGAAATTAGCAGCAGTCGTCAATAACCTAAATACTGGACAAGTG TTGCATGTGGTACAGGCTCTTTACCCATTCAGCTCCTCCAATGATGAAGAACTTAATTTC GAGAAAGGAGATATAATGGATGTTATTGAAAAACCTGAAAATGATCCTGAGTGGTGGAAA TGCAGGAAGATCAATGGAATGATTGGTCTGGTGCCAAAAAACTATGTTACCATTATGCAG AATAATCCATTAACCTCGGGTCTAGAACCATCACCTCCACAATGTGATTACATTAGGCCT TCACTCACTGGAAAATTTGCTGGCAATCCATGGTATTATGGCAAAGTCACCAGGCACCAA GCAGAAATGGCATTAAATGAAAGAGGCCGTGAAGGTGATTTCCTCATTCGTGATAGTGAA TCTTCGCCAAATGATTTCTCTGTATCACTAAAAGCACAAGGGAAAAACAAGCATTTTAAA GTCCAACTAAAGGAGACTCTCTACTGCATTGGGCAGCGTAAATTCAGCACGATGGAAGAA CTTGTAGAACATTACAAAAAGGCACCAATTTTTACAAGTGAACAAGGAGAGAAATTATAT CTTATTAAGCATTTATCATGATATTGTTGACCAGAAGTGACTGCTACACAGTTGTAATTC ATCATGTAATTGAAGACTGAGAAAATGTCAGTCCAGTCATGCTTGATTGGAAAGTGCTGT TTCTAACTCTATGAGAATTGACTGTAATACATAAGTATTTTTTATTATAACTCGGCACAT ACATATATTTACTACATATGCCAAGCATCTGCATAGAGCAATTCCTTATCCTTGGTCTTC TGTTTTATTGGGATTTTTTTGGCTGTTTTTCTCTTTGCTTCTAATAGTAAGGTTTTATAT TTTGAAAAAATGATGCAAGTCAAAAGTCTTTATATGGAAGAATTTCTTTATTGCCTCTTT ATTTCTGTGTAAGGGCACCACCTTAGTTACTTCTGCAATGGTTTCTCATCATATAAAATT ATTATATCAATTATATCAATATATGGCATATGCTAAAATAAATTTCTTGGAGAGTTAATC TTTTCTGTGACTAAATAGCAATAATAAATGGAAAATTTAGAAATTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGAGCGGAGGCCTCGTGCCCTAACGGCCATCGCGGTGGCCGCGGTGGCATCCCGGTGC CCTCCTCAGTGCAGAAGCTGCTGAAAAATGGCAGAAGAAGTGGTGGTAGTAGCCAAATTT GATTATGTTGCACAACAAGAACAAGAGCTTGACATCAAGAAGAATGAGAGACTATGGCTT TTGGATGATTCTAAGTCCTGGTGGCGAGTACGAAATTCGATGAATAAAACAGGTTTTGTG CCTTCTAACTATGTGGAAAGGAAAAACAGTGCCCGGAAAGCATCTATTGTAAAAAACCTA AAAGATACCTTAGGCATTGGAAAAGTGAAAAGAAAACATAGTGTGCCAGATTCTGCATCT CCTGCTGATGAAAGCTTTGTTGACCCAGGGGAACGTCTCTATGATCTCAACATGCCTGCT TATGTGAAATTTAACTACATGGCAGAGAGAGAGGATGAATTGTCATTGATAAAAGGGACG AAGGTGATTGTCATGGAGAAATGCAGTGATGGTTGGTGGCGCGGTAGCTACAATGGACAA ATTGGATGGTTTCCTTCAAACTATGTAACTGAGGAAGGTGACAGTCCTTTGGGTGACCAT GTGGGTTCCTTGTCAGAGAAATTAGCAGCAGTCGTCAATAACCTAAATACTGGACAAGTG TTGCATGTGGTACAGGCTCTTTACCCATTCAGCTCCTCCAATGATGAAGAACTTAATTTC GAGAAAGGAGATATAATGGATGTTATTGAAAAACCTGAAAATGATCCTGAGTGGTGGAAA TGCAGGAAGATCAATGGAATGATTGGTCTGGTGCCAAAAAACTATGTTACCATTATGCAG AATAATCCATTAACCTCGGGTCTAGAACCATCACCTCCACAATGTGATTACATTAGGCCT TCACTCACTGGAAAATTTGCTGGCAATCCATGGTATTATGGCAAAGTCACCAGGCACCAA GCAGAAATGGCATTAAATGAAAGAGGCCGTGAAGGTGATTTCCTCATTCGTGATAGTGAA TCTTCGCCAAATGATTTCTCTGTATCACTAAAAGCACAAGGGAAAAACAAGCATTTTAAA GTCCAACTAAAGGAGACTCTCTACTGCATTGGGCAGCGTAAATTCAGCACGATGGAAGAA CTTGTAGAACATTACAAAAAGGCACCAATTTTTACAAGTGAACAAGGAGAGAAATTATAT CTTATTAAGCATTTATCATGATATTGTTGACCAGAAGTGACTGCTACACAGTTGTAATTC ATCATGTAATTGAAGACTGAGAAAATGTCAGTCCAGTCATGCTTGATTGGAAAGTGCTGT TTCTAACTCTATGAGAATTGACTGTAATACATAAGTATTTTTTATTATAACTCGGCACAT ACATATATTTACTACATATGCCAAGCATCTGCATAGAGCAATTCCTTATCCTTGGTCTTC TGTTTTATTGGGATTTTTTTGGCTGTTTTTCTCTTTGCTTCTAATAGTAAGGTTTTATAT TTTGAAAAAATGATGCAAGTCAAAAGTCTTTATATGGAAGAATTTCTTTATTGCCTCTTT ATTTCTGTGTAAGGGCACCACCTTAGTTACTTCTGCAATGGTTTCTCATCATATAAAATT ATTATATCAATTATATCAATATATGGCATATGCTAAAATAAATTTCTTGGAGAGTTAATC TTTTCTGTGACTAAATAGCAATAATAAATGGAAAATTTAGAAATTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 71-320, gnl|bosTau2|chr11 (36940959-36941212) | |
| 71-320, gnl|canFam2|chr10 (40746862-40746607) | |
| 71-320, gnl|danRer3|chr9 (10958937-10958682) | |
| 71-320, gnl|dasNov1|scaffold_4848 (132990-132735) | |
| 71-320, gnl|echTel1|scaffold_308939 (8933-8678) | |
| 71-320, gnl|fr1|chrUn (283595394-283595140) | |
| 71-320, gnl|galGal2|chr1 (128446711-128446965) | |
| 71-320, gnl|hg17|chr2 (105930017-105930272) | |
| 71-320, gnl|Hg17|chr2 (105930018-105930269) | |
| 71-320, gnl|loxAfr1|scaffold_95778 (3638-3893) | |
| 71-320, gnl|mm7|chr1 (43773934-43774189) | |
| 71-320, gnl|Mm7|chr1 (43773935-43774187) | |
| 71-320, gnl|monDom2|scaffold_11 (24927425-24927680) | |
| 71-320, gnl|oryCun1|scaffold_198992 (2367-2604) | |
| 71-320, gnl|panTro1|chr12 (108898882-108899137) | |
| 71-320, gnl|rheMac2|chr13 (105732214-105732468) | |
| 71-320, gnl|rn3|chr9 (42740329-42740584) | |
| 71-320, gnl|tetNig1|chr2 (9047024-9047276) | |
| 71-320, gnl|xenTro1|scaffold_1892 (6966-7221) | |
| 391-827, gnl|bosTau2|chr11 (36953904-36954340) | |
| 391-827, gnl|Hg17|chr2 (105956394-105956830) | |
| 391-827, gnl|Mm7|chr1 (43794340-43794776) | |
| 1026-1202, gnl|bosTau2|chr11 (36966771-36966947) | |
| 1026-1202, gnl|canFam2|chr10 (40709035-40708866) | |
| 1026-1202, gnl|danRer3|chr9 (10939823-10939656) | |
| 1026-1202, gnl|dasNov1|scaffold_9856 (20308-20474) | |
| 1026-1202, gnl|echTel1|scaffold_221408 (5265-5416) | |
| 1026-1202, gnl|fr1|chrUn (283589376-283589233) | |
| 1026-1202, gnl|galGal2|chr1 (128473721-128473899) | |
| 1026-1202, gnl|hg17|chr2 (105967930-105968097) | |
| 1026-1202, gnl|Hg17|chr2 (105967955-105968131) | |
| 1026-1202, gnl|loxAfr1|scaffold_18854 (11526-11677) | |
| 1026-1202, gnl|mm7|chr1 (43809508-43809676) | |
| 1026-1202, gnl|Mm7|chr1 (43809534-43809710) | |
| 1026-1202, gnl|monDom2|scaffold_11 (24981297-24981477) | |
| 1026-1202, gnl|oryCun1|scaffold_126239 (6744-6587) | |
| 1026-1202, gnl|rheMac2|chr13 (105772127-105772294) | |
| 1026-1202, gnl|rn3|chr9 (42777018-42777186) | |
| 1026-1202, gnl|tetNig1|chr2 (9051727-9051879) | |
| 1026-1202, gnl|xenTro1|scaffold_1892 (16263-16424) | |
| 1464-1739, gnl|bosTau2|chr21 (9243250-9242970) | |
| 1464-1739, gnl|Hg17|chr3 (138150198-138150481) | |
| 1464-1739, gnl|Mm7|chr9 (100138262-100137997) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-320, gnl|bosTau2|chr11 (36940959-36941212) | |
| 71-320, gnl|canFam2|chr10 (40746862-40746607) | |
| 71-320, gnl|danRer3|chr9 (10958937-10958682) | |
| 71-320, gnl|dasNov1|scaffold_4848 (132990-132735) | |
| 71-320, gnl|echTel1|scaffold_308939 (8933-8678) | |
| 71-320, gnl|fr1|chrUn (283595394-283595140) | |
| 71-320, gnl|galGal2|chr1 (128446711-128446965) | |
| 71-320, gnl|hg17|chr2 (105930017-105930272) | |
| 71-320, gnl|Hg17|chr2 (105930018-105930269) | |
| 71-320, gnl|loxAfr1|scaffold_95778 (3638-3893) | |
| 71-320, gnl|mm7|chr1 (43773934-43774189) | |
| 71-320, gnl|Mm7|chr1 (43773935-43774187) | |
| 71-320, gnl|monDom2|scaffold_11 (24927425-24927680) | |
| 71-320, gnl|oryCun1|scaffold_198992 (2367-2604) | |
| 71-320, gnl|panTro1|chr12 (108898882-108899137) | |
| 71-320, gnl|rheMac2|chr13 (105732214-105732468) | |
| 71-320, gnl|rn3|chr9 (42740329-42740584) | |
| 71-320, gnl|tetNig1|chr2 (9047024-9047276) | |
| 71-320, gnl|xenTro1|scaffold_1892 (6966-7221) | |
| 391-827, gnl|bosTau2|chr11 (36953904-36954340) | |
| 391-827, gnl|Hg17|chr2 (105956394-105956830) | |
| 391-827, gnl|Mm7|chr1 (43794340-43794776) | |
| 1026-1202, gnl|bosTau2|chr11 (36966771-36966947) | |
| 1026-1202, gnl|canFam2|chr10 (40709035-40708866) | |
| 1026-1202, gnl|danRer3|chr9 (10939823-10939656) | |
| 1026-1202, gnl|dasNov1|scaffold_9856 (20308-20474) | |
| 1026-1202, gnl|echTel1|scaffold_221408 (5265-5416) | |
| 1026-1202, gnl|fr1|chrUn (283589376-283589233) | |
| 1026-1202, gnl|galGal2|chr1 (128473721-128473899) | |
| 1026-1202, gnl|hg17|chr2 (105967930-105968097) | |
| 1026-1202, gnl|Hg17|chr2 (105967955-105968131) | |
| 1026-1202, gnl|loxAfr1|scaffold_18854 (11526-11677) | |
| 1026-1202, gnl|mm7|chr1 (43809508-43809676) | |
| 1026-1202, gnl|Mm7|chr1 (43809534-43809710) | |
| 1026-1202, gnl|monDom2|scaffold_11 (24981297-24981477) | |
| 1026-1202, gnl|oryCun1|scaffold_126239 (6744-6587) | |
| 1026-1202, gnl|rheMac2|chr13 (105772127-105772294) | |
| 1026-1202, gnl|rn3|chr9 (42777018-42777186) | |
| 1026-1202, gnl|tetNig1|chr2 (9051727-9051879) | |
| 1026-1202, gnl|xenTro1|scaffold_1892 (16263-16424) | |
| 1464-1739, gnl|bosTau2|chr21 (9243250-9242970) | |
| 1464-1739, gnl|Hg17|chr3 (138150198-138150481) | |
| 1464-1739, gnl|Mm7|chr9 (100138262-100137997) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| thg (0.507164) | |
| mga (0.480615) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ova (0.258264) | |
| mas (0.210305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.507164) | |
| mga (0.480615) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ova (0.258264) | |
| mas (0.210305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) |