Non-Coding RNA Search

Ss1.1-Mixn-0034k09.5

Sequence:


               
               GAGGAGGTGCTCCTGCTGGGCCTCAAGGACCGAGAGGGTTACACATCATTTGGGAATGAC
TGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCGTTGAGAGGAAGGTTA
CAGCTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAGGTAATTTGTAAG
TCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAGGCTCTAAAGCATGTTAAGGAGACT
CAGCCTCCAGAAACGGTCCAGAATTGGATTGAATTACTTAGTGGTGAGACTTGGAATCCA
TTAAAATTGCATTATCAGTTAAGAAACGTGCGGGAACGGTTAGCTAAAAACCTGGTGGAG
AAGGGTGTACTGACAACAGAGAAACAGAACTTCCTGCTGTTTGACATGACGACACATCCC
CTCACCAATAACAACATTAAGCAGCGCCTCATCAAGAAGGTACAGGAAGCCGTTCTCGAC
AAATGGGTGAACGACCCTCACCGCATGGACAAGCGCCTGCTGGCCCTCATCTACCTGGCC
CACGCCTCGGATGTCCTGGAGAACGCCTTCGCTCCCCTGCTGGACGAGCAGTACGATTTA
GCCACCAAGCGGGTGCGGCAGCTCCTGGACCTGGATCCTGAAGTGGAGTGTCTGAAGGCC
AGCACCAACGAGGTGCTATGGGCGGTGGTGGCCGCCTTCACCAAGTGACTCAGCCCCGAG
CCAGGCGCTGTCCTTTCTCTCGTGTGAGCCAGTAGTTTTTCTTCTCTGGACTTCTGGTTT
TCTGCAGTTTGTCCTTTCCACACTATAATTGGCTTTTGTTTTATGAAACGGTGGGTGGCT
TTTTCTTTTCTGTATGTATGCAGGATTCTGCTGGTACGAGAGGCCTTCTTTCTGTTTTAA
AAGAAGTTTTACTGCCATATTGGCATTCCACTCCTTGTTGCCATCTTCACTGTTACCTGT
TTTGGGTTTCTGGTGTACTTTGGCTTTCAGAGTACCTCCACTCTCCTCACATGCACATCT
TTTGGATTACCTCAGGTTGAGTTTTTCCCACATGTGCACATACATCTAGCATTCTGCCTG
CAATTCAGACAGAAGTCACAAAAAGGCCTTTAACTCACCAAAGGTAAATATCTGTATCTA
TTAGGACATTTTATACATAGAACTCAGTTGAGATGTATACTTAACAAAATTATTTTTAAA
TTGAAACAACACAGTAAATAATATAAAGTGCCCCTTGGATTTTGCTTCCCATGTAAATCT
ATTGTATTATTACACTTGTTATAATTTTAACTATTAAATCATAAAGGTCCAATTGTTTCA
CAAAGCCAGTTTGGGATGGGCTGCATTCCAGCTATGCTGTATATAGTTTGAATTATATAT
AAATTGCTCTTTCTTCTGGCCACCCCTGCCCATCTTAGTATTTTGCAAGATATAATTATC
TATACACCTGGTGCCCCTTACTTGCTACAGTCATTATTATTTGATGGCAAAATAGCCCTC
TCATCATTGAAGGAGAGAGAAAAGATGTAAGTCTAATTCGTCTCAAGATTTTTTGAGCTG
TGCCATTCATGGTACTCTTTGCCTATGCATCTCCTTTTTCGAATTTTTTTTGGTCTTAAC
TATTTTTATCATTTCTGTAGGGAAGAGGCTTGTGACCAGTACTAATCTTGAGTACAGTTT
TATCTTTTTCTGTCCACAAGTAAATTAATGTCTGCTCTTAAATGTCATTTATCTACTCAC
ACTTTCTTGGGAGAAAAAAATCAAATGTCAGTTCTAGCAGATGTTGCATGTAAATTGTTA
GCAAGTAATGACTACAACTCAGATGATTAAGAATTTTGTAACAGAAAGCTCTGCTGTTTT
AATTTTTATATACAATTATGATTAGCACATTGTAAGAATATAAACCTTTGCTTTTTAAAG
TTTATTTTTTACTATTTCTTTATCACTGTTTATCGTATCACCTTTGGTTTCATAATGTAA
ATACTATATATTGAACAAATTAAATGTCAGATTTTTTATTACCATAGTTCATGTTACTAG
TGGGGCTTTCAGGTGTTTAGAGATTTTTTTTGGTTAACATTCAATGCAAAAGTACTAGAT
GGTGTATAACTCTAGGTTGAATTTTAAGGGATTCCCTAATATGTATCCTATCTTTTTATC
TGAAGTAATAAATAAACTATGATCTTGAAAGTGCCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGTGCTCCTGCTGGGCCTCAAGGACCGAGAGGGTTACACATCATTTGGGAATGAC
TGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCGTTGAGAGGAAGGTTA
CAGCTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAGGTAATTTGTAAG
TCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAGGCTCTAAAGCATGTTAAGGAGACT
CAGCCTCCAGAAACGGTCCAGAATTGGATTGAATTACTTAGTGGTGAGACTTGGAATCCA
TTAAAATTGCATTATCAGTTAAGAAACGTGCGGGAACGGTTAGCTAAAAACCTGGTGGAG
AAGGGTGTACTGACAACAGAGAAACAGAACTTCCTGCTGTTTGACATGACGACACATCCC
CTCACCAATAACAACATTAAGCAGCGCCTCATCAAGAAGGTACAGGAAGCCGTTCTCGAC
AAATGGGTGAACGACCCTCACCGCATGGACAAGCGCCTGCTGGCCCTCATCTACCTGGCC
CACGCCTCGGATGTCCTGGAGAACGCCTTCGCTCCCCTGCTGGACGAGCAGTACGATTTA
GCCACCAAGCGGGTGCGGCAGCTCCTGGACCTGGATCCTGAAGTGGAGTGTCTGAAGGCC
AGCACCAACGAGGTGCTATGGGCGGTGGTGGCCGCCTTCACCAAGTGACTCAGCCCCGAG
CCAGGCGCTGTCCTTTCTCTCGTGTGAGCCAGTAGTTTTTCTTCTCTGGACTTCTGGTTT
TCTGCAGTTTGTCCTTTCCACACTATAATTGGCTTTTGTTTTATGAAACGGTGGGTGGCT
TTTTCTTTTCTGTATGTATGCAGGATTCTGCTGGTACGAGAGGCCTTCTTTCTGTTTTAA
AAGAAGTTTTACTGCCATATTGGCATTCCACTCCTTGTTGCCATCTTCACTGTTACCTGT
TTTGGGTTTCTGGTGTACTTTGGCTTTCAGAGTACCTCCACTCTCCTCACATGCACATCT
TTTGGATTACCTCAGGTTGAGTTTTTCCCACATGTGCACATACATCTAGCATTCTGCCTG
CAATTCAGACAGAAGTCACAAAAAGGCCTTTAACTCACCAAAGGTAAATATCTGTATCTA
TTAGGACATTTTATACATAGAACTCAGTTGAGATGTATACTTAACAAAATTATTTTTAAA
TTGAAACAACACAGTAAATAATATAAAGTGCCCCTTGGATTTTGCTTCCCATGTAAATCT
ATTGTATTATTACACTTGTTATAATTTTAACTATTAAATCATAAAGGTCCAATTGTTTCA
CAAAGCCAGTTTGGGATGGGCTGCATTCCAGCTATGCTGTATATAGTTTGAATTATATAT
AAATTGCTCTTTCTTCTGGCCACCCCTGCCCATCTTAGTATTTTGCAAGATATAATTATC
TATACACCTGGTGCCCCTTACTTGCTACAGTCATTATTATTTGATGGCAAAATAGCCCTC
TCATCATTGAAGGAGAGAGAAAAGATGTAAGTCTAATTCGTCTCAAGATTTTTTGAGCTG
TGCCATTCATGGTACTCTTTGCCTATGCATCTCCTTTTTCGAATTTTTTTTGGTCTTAAC
TATTTTTATCATTTCTGTAGGGAAGAGGCTTGTGACCAGTACTAATCTTGAGTACAGTTT
TATCTTTTTCTGTCCACAAGTAAATTAATGTCTGCTCTTAAATGTCATTTATCTACTCAC
ACTTTCTTGGGAGAAAAAAATCAAATGTCAGTTCTAGCAGATGTTGCATGTAAATTGTTA
GCAAGTAATGACTACAACTCAGATGATTAAGAATTTTGTAACAGAAAGCTCTGCTGTTTT
AATTTTTATATACAATTATGATTAGCACATTGTAAGAATATAAACCTTTGCTTTTTAAAG
TTTATTTTTTACTATTTCTTTATCACTGTTTATCGTATCACCTTTGGTTTCATAATGTAA
ATACTATATATTGAACAAATTAAATGTCAGATTTTTTATTACCATAGTTCATGTTACTAG
TGGGGCTTTCAGGTGTTTAGAGATTTTTTTTGGTTAACATTCAATGCAAAAGTACTAGAT
GGTGTATAACTCTAGGTTGAATTTTAAGGGATTCCCTAATATGTATCCTATCTTTTTATC
TGAAGTAATAAATAAACTATGATCTTGAAAGTGCCTGAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6453523|emb|CAB61398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6453523|emb|CAB61398.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               840-1114, - strand, RNAz p=0.992194
               

               
               1310-1427, - strand, RNAz p=0.617918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               840-1114, - strand, RNAz p=0.992194
               

               
               1310-1427, - strand, RNAz p=0.617918

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               283-1634, gnl|bosTau2|chr20 (26815967-26817314)
               

               
               283-1634, gnl|Hg17|chr5 (32162500-32161164)
               

               
               283-1634, gnl|Mm7|chr15 (12409329-12410645)
               


               
               1941-2207, gnl|bosTau2|chr4 (47773613-47773345)
               

               
               1941-2207, gnl|Hg17|chr5 (32160828-32160579)
               

               
               1941-2207, gnl|Mm7|chr15 (12410979-12411229)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-1634, gnl|bosTau2|chr20 (26815967-26817314)
               

               
               283-1634, gnl|Hg17|chr5 (32162500-32161164)
               

               
               283-1634, gnl|Mm7|chr15 (12409329-12410645)
               


               
               1941-2207, gnl|bosTau2|chr4 (47773613-47773345)
               

               
               1941-2207, gnl|Hg17|chr5 (32160828-32160579)
               

               
               1941-2207, gnl|Mm7|chr15 (12410979-12411229)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               col (0.585023)
               

               
               spl (0.429553)
               

               
               pla (0.401016)
               

               
               ill (0.351185)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               lin (0.291206)
               

               
               pty (0.285429)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.585023)
               

               
               spl (0.429553)
               

               
               pla (0.401016)
               

               
               ill (0.351185)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               lin (0.291206)
               

               
               pty (0.285429)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	840-1114, - strand, RNAz p=0.992194
	1310-1427, - strand, RNAz p=0.617918

	283-1634, gnl\|bosTau2\|chr20 (26815967-26817314)
	283-1634, gnl\|Hg17\|chr5 (32162500-32161164)
	283-1634, gnl\|Mm7\|chr15 (12409329-12410645)

	1941-2207, gnl\|bosTau2\|chr4 (47773613-47773345)
	1941-2207, gnl\|Hg17\|chr5 (32160828-32160579)
	1941-2207, gnl\|Mm7\|chr15 (12410979-12411229)

	col (0.585023)
	spl (0.429553)
	pla (0.401016)
	ill (0.351185)
	fco (0.314416)
	cty (0.31224)
	lin (0.291206)
	pty (0.285429)
	jca (0.22792)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	nbm (0.0993246)
	jej (0.0989218)