Ss1.1-Mixn-0034k14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCTTGGGCACTGTCGAGCGGACTCAGGATTCTGAAGGCTCCTTCAAACTGGAGGATC CCACAGAGGTGACTCCAGGATTGGCCTTCTTTAACCCTGTCTGTGCCACTCCCAACAGCA AGATCCTGAAAGAGATGTGTGATGCAGAGCAGGTGCTATTAAAGAAGACGGCTTCAGCTG CCTCCTACCTTGGCCTCCCAGAGTCGAAACACATAGCAACAGAATCCCAAGAAAATAAAG CTCCAGGGAAGAAAAAGAAACGAGCTCTGGCCAGCAATACCAGCTTCTTCTCTGGCTGCT CCCCCATTGAAGAAGAGGCCCACTGAAGTTGGACTCATCATCTCTGCCCCCCGTCTGGCT TGGGAGAGGCTTTCCGGTTGCAGCCGGAAGGGGTTTTCTAATGACTCCTCTTGATTTCAG GTTTCTTGCTGTTGACAAAGGAATGGCATGTTACTGAGAGAGAGAGAGAACATTTGTTGG ATGCTGGCAACTCAATCTCCGCCCTCCCCACCCCAGCCCCAGACTACTACTCTCCTCTCC AGAAGGGTGCTGAGCTACCTGCTGAAGAGAGAACCAGCTGACCTTCCTGGTGACTCATCA GGAAACAGTCCTCAGTACAATCTAGTTCTTTCTTATTCATGAGCAGTTAGAGCTATCTCC CAATGGGGACCAGGCCAAGGCTATCTTATCTCTAGGTTGTCTCAGCTTAATGGCAGAGCC TGGCCTAGGTTGGTGGCCTGGCAGATCCTTCACCCCACCTCTGGAATGAGGTTGGGATCT TTCCTGTCCTGACTTCTCTGGATTCTACCTTCAGTTGTCTCTCATGTTGCTGAGGTAAAT GAAGTCTTTTTAAATGTTAATGTTAAGTAAATAAATAAATCTTAGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCTTGGGCACTGTCGAGCGGACTCAGGATTCTGAAGGCTCCTTCAAACTGGAGGATC CCACAGAGGTGACTCCAGGATTGGCCTTCTTTAACCCTGTCTGTGCCACTCCCAACAGCA AGATCCTGAAAGAGATGTGTGATGCAGAGCAGGTGCTATTAAAGAAGACGGCTTCAGCTG CCTCCTACCTTGGCCTCCCAGAGTCGAAACACATAGCAACAGAATCCCAAGAAAATAAAG CTCCAGGGAAGAAAAAGAAACGAGCTCTGGCCAGCAATACCAGCTTCTTCTCTGGCTGCT CCCCCATTGAAGAAGAGGCCCACTGAAGTTGGACTCATCATCTCTGCCCCCCGTCTGGCT TGGGAGAGGCTTTCCGGTTGCAGCCGGAAGGGGTTTTCTAATGACTCCTCTTGATTTCAG GTTTCTTGCTGTTGACAAAGGAATGGCATGTTACTGAGAGAGAGAGAGAACATTTGTTGG ATGCTGGCAACTCAATCTCCGCCCTCCCCACCCCAGCCCCAGACTACTACTCTCCTCTCC AGAAGGGTGCTGAGCTACCTGCTGAAGAGAGAACCAGCTGACCTTCCTGGTGACTCATCA GGAAACAGTCCTCAGTACAATCTAGTTCTTTCTTATTCATGAGCAGTTAGAGCTATCTCC CAATGGGGACCAGGCCAAGGCTATCTTATCTCTAGGTTGTCTCAGCTTAATGGCAGAGCC TGGCCTAGGTTGGTGGCCTGGCAGATCCTTCACCCCACCTCTGGAATGAGGTTGGGATCT TTCCTGTCCTGACTTCTCTGGATTCTACCTTCAGTTGTCTCTCATGTTGCTGAGGTAAAT GAAGTCTTTTTAAATGTTAATGTTAAGTAAATAAATAAATCTTAGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 666-757, + strand, RNAz p=0.95168 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 666-757, + strand, RNAz p=0.95168 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_012310, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 121-464, gnl|bosTau2|chrX (20407013-20407355) | |
| 121-464, gnl|Hg17|chrX (69422931-69423276) | |
| 121-464, gnl|Mm7|chrX (96053812-96054163) | |
| 511-604, gnl|bosTau2|chrX (20407366-20407468) | |
| 511-604, gnl|canFam2|chrX (57789821-57789910) | |
| 511-604, gnl|canFam2|chrX (57789823-57790253) | |
| 511-604, gnl|dasNov1|scaffold_5793 (23922-24010) | |
| 511-604, gnl|dasNov1|scaffold_74119 (7600-8032) | |
| 511-604, gnl|echTel1|scaffold_71629 (256-353) | |
| 511-604, gnl|echTel1|scaffold_94196 (3499-3142) | |
| 511-604, gnl|hg17|chr5 (154377487-154377904) | |
| 511-604, gnl|hg17|chrX (69423304-69423392) | |
| 511-604, gnl|Hg17|chrX (69423305-69423400) | |
| 511-604, gnl|loxAfr1|scaffold_17241 (16524-16428) | |
| 511-604, gnl|loxAfr1|scaffold_17241 (16524-16106) | |
| 511-604, gnl|mm7|chr12 (98644784-98645105) | |
| 511-604, gnl|mm7|chrX (96054185-96054265) | |
| 511-604, gnl|Mm7|chrX (96054180-96054273) | |
| 511-604, gnl|monDom2|scaffold_188 (701391-701468) | |
| 511-604, gnl|monDom2|scaffold_188 (701393-701762) | |
| 511-604, gnl|oryCun1|scaffold_196874 (33495-33582) | |
| 511-604, gnl|oryCun1|scaffold_196874 (33495-33858) | |
| 511-604, gnl|panTro1|chr4 (161329093-161329181) | |
| 511-604, gnl|panTro1|chr4 (161329093-161329511) | |
| 511-604, gnl|rheMac2|chr6 (151386801-151387217) | |
| 511-604, gnl|rheMac2|chrX (69393794-69393882) | |
| 511-604, gnl|rn3|chr6 (125424384-125424702) | |
| 511-604, gnl|rn3|chrX (88815114-88815199) | |
| 666-888, gnl|bosTau2|chrX (20407465-20407698) | |
| 666-888, gnl|canFam2|chrX (57789911-57790316) | |
| 666-888, gnl|canFam2|chrX (57789823-57790253) | |
| 666-888, gnl|dasNov1|scaffold_5793 (24011-24361) | |
| 666-888, gnl|dasNov1|scaffold_74119 (7600-8032) | |
| 666-888, gnl|echTel1|scaffold_71629 (354-713) | |
| 666-888, gnl|echTel1|scaffold_94196 (3499-3142) | |
| 666-888, gnl|hg17|chr5 (154377487-154377904) | |
| 666-888, gnl|hg17|chrX (69423393-69423782) | |
| 666-888, gnl|Hg17|chrX (69423397-69423692) | |
| 666-888, gnl|loxAfr1|scaffold_17241 (16427-16035) | |
| 666-888, gnl|loxAfr1|scaffold_17241 (16524-16106) | |
| 666-888, gnl|mm7|chr12 (98644784-98645105) | |
| 666-888, gnl|mm7|chrX (96054266-96054650) | |
| 666-888, gnl|Mm7|chrX (96054270-96054561) | |
| 666-888, gnl|monDom2|scaffold_188 (701469-701854) | |
| 666-888, gnl|monDom2|scaffold_188 (701393-701762) | |
| 666-888, gnl|oryCun1|scaffold_196874 (33583-34010) | |
| 666-888, gnl|oryCun1|scaffold_196874 (33495-33858) | |
| 666-888, gnl|panTro1|chr4 (161329093-161329511) | |
| 666-888, gnl|panTro1|chrX (71590813-71591201) | |
| 666-888, gnl|rheMac2|chr6 (151386801-151387217) | |
| 666-888, gnl|rheMac2|chrX (69393883-69394272) | |
| 666-888, gnl|rn3|chr6 (125424384-125424702) | |
| 666-888, gnl|rn3|chrX (88815200-88815573) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-464, gnl|bosTau2|chrX (20407013-20407355) | |
| 121-464, gnl|Hg17|chrX (69422931-69423276) | |
| 121-464, gnl|Mm7|chrX (96053812-96054163) | |
| 511-604, gnl|bosTau2|chrX (20407366-20407468) | |
| 511-604, gnl|canFam2|chrX (57789821-57789910) | |
| 511-604, gnl|canFam2|chrX (57789823-57790253) | |
| 511-604, gnl|dasNov1|scaffold_5793 (23922-24010) | |
| 511-604, gnl|dasNov1|scaffold_74119 (7600-8032) | |
| 511-604, gnl|echTel1|scaffold_71629 (256-353) | |
| 511-604, gnl|echTel1|scaffold_94196 (3499-3142) | |
| 511-604, gnl|hg17|chr5 (154377487-154377904) | |
| 511-604, gnl|hg17|chrX (69423304-69423392) | |
| 511-604, gnl|Hg17|chrX (69423305-69423400) | |
| 511-604, gnl|loxAfr1|scaffold_17241 (16524-16428) | |
| 511-604, gnl|loxAfr1|scaffold_17241 (16524-16106) | |
| 511-604, gnl|mm7|chr12 (98644784-98645105) | |
| 511-604, gnl|mm7|chrX (96054185-96054265) | |
| 511-604, gnl|Mm7|chrX (96054180-96054273) | |
| 511-604, gnl|monDom2|scaffold_188 (701391-701468) | |
| 511-604, gnl|monDom2|scaffold_188 (701393-701762) | |
| 511-604, gnl|oryCun1|scaffold_196874 (33495-33582) | |
| 511-604, gnl|oryCun1|scaffold_196874 (33495-33858) | |
| 511-604, gnl|panTro1|chr4 (161329093-161329181) | |
| 511-604, gnl|panTro1|chr4 (161329093-161329511) | |
| 511-604, gnl|rheMac2|chr6 (151386801-151387217) | |
| 511-604, gnl|rheMac2|chrX (69393794-69393882) | |
| 511-604, gnl|rn3|chr6 (125424384-125424702) | |
| 511-604, gnl|rn3|chrX (88815114-88815199) | |
| 666-888, gnl|bosTau2|chrX (20407465-20407698) | |
| 666-888, gnl|canFam2|chrX (57789911-57790316) | |
| 666-888, gnl|canFam2|chrX (57789823-57790253) | |
| 666-888, gnl|dasNov1|scaffold_5793 (24011-24361) | |
| 666-888, gnl|dasNov1|scaffold_74119 (7600-8032) | |
| 666-888, gnl|echTel1|scaffold_71629 (354-713) | |
| 666-888, gnl|echTel1|scaffold_94196 (3499-3142) | |
| 666-888, gnl|hg17|chr5 (154377487-154377904) | |
| 666-888, gnl|hg17|chrX (69423393-69423782) | |
| 666-888, gnl|Hg17|chrX (69423397-69423692) | |
| 666-888, gnl|loxAfr1|scaffold_17241 (16427-16035) | |
| 666-888, gnl|loxAfr1|scaffold_17241 (16524-16106) | |
| 666-888, gnl|mm7|chr12 (98644784-98645105) | |
| 666-888, gnl|mm7|chrX (96054266-96054650) | |
| 666-888, gnl|Mm7|chrX (96054270-96054561) | |
| 666-888, gnl|monDom2|scaffold_188 (701469-701854) | |
| 666-888, gnl|monDom2|scaffold_188 (701393-701762) | |
| 666-888, gnl|oryCun1|scaffold_196874 (33583-34010) | |
| 666-888, gnl|oryCun1|scaffold_196874 (33495-33858) | |
| 666-888, gnl|panTro1|chr4 (161329093-161329511) | |
| 666-888, gnl|panTro1|chrX (71590813-71591201) | |
| 666-888, gnl|rheMac2|chr6 (151386801-151387217) | |
| 666-888, gnl|rheMac2|chrX (69393883-69394272) | |
| 666-888, gnl|rn3|chr6 (125424384-125424702) | |
| 666-888, gnl|rn3|chrX (88815200-88815573) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fty (0.17584) | |
| eli (0.151814) | |
| pty (0.142714) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| eli (0.151814) | |
| pty (0.142714) | |
| eje (0.0988338) |