Non-Coding RNA Search

Ss1.1-Mixn-0034n04.5

Sequence:


               
               GGGTGCGCCAGGCCGGGTCCTGCTGTGGCTGCAGCTCTGCGCGCTGACACGGGCCGCCTA
CAAACTCTGGGTCCCCAACACCTACTTTGATGCCGCCGATAACTGGAGCCAGAACCAGAC
CCCATGCGCAGGCGCTGCCGTCAAATTCCCTGCGGACAAGATGGTGTCCGTCCTGGTGCG
AGAAGGTCACAGCATCTCGGATATGCTCCTGCCACTGGACGGGGAATTTGTCCTGGCCTC
CGGAGCTGGATTCAGCGCCCAGAACACCGGCTCACACCTGGACTGTAGCGCAGGAGCCTC
CGCGCTCTTCCTCGACCCCGACCGTTTCTTGTGGCACGACCCGCGCCTGTGGAGCGCGGG
GGACGCGGGGCGCAGTCTTTTCTCCGTGGACGCTGAGCGCGTGCCCTGCCGCCACGACGA
CGCCGTCTTCCCGTCCGACGCCTCCTTCCGGGTGGGCCTCGGCCCCGGCACCGTGCGGGT
CCGCAGCGTCCGGGCTCTGGGCCAGACGTTCACGCGCGACGAGGACCTGGCTGCCTTCCT
GGCGTCCCGCGCAGGCCGCCTGCGCTTCCACGGGTCGGGCGCGCTGAGCGTGGACCCCGA
GGCCTGCGCGGACCCGTCGGGCTGCGTCTGCGGCAACGCCGAGGTGCAGCCGTGGATCTG
CGCGGCACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGCGCCAGGCCGGGTCCTGCTGTGGCTGCAGCTCTGCGCGCTGACACGGGCCGCCTA
CAAACTCTGGGTCCCCAACACCTACTTTGATGCCGCCGATAACTGGAGCCAGAACCAGAC
CCCATGCGCAGGCGCTGCCGTCAAATTCCCTGCGGACAAGATGGTGTCCGTCCTGGTGCG
AGAAGGTCACAGCATCTCGGATATGCTCCTGCCACTGGACGGGGAATTTGTCCTGGCCTC
CGGAGCTGGATTCAGCGCCCAGAACACCGGCTCACACCTGGACTGTAGCGCAGGAGCCTC
CGCGCTCTTCCTCGACCCCGACCGTTTCTTGTGGCACGACCCGCGCCTGTGGAGCGCGGG
GGACGCGGGGCGCAGTCTTTTCTCCGTGGACGCTGAGCGCGTGCCCTGCCGCCACGACGA
CGCCGTCTTCCCGTCCGACGCCTCCTTCCGGGTGGGCCTCGGCCCCGGCACCGTGCGGGT
CCGCAGCGTCCGGGCTCTGGGCCAGACGTTCACGCGCGACGAGGACCTGGCTGCCTTCCT
GGCGTCCCGCGCAGGCCGCCTGCGCTTCCACGGGTCGGGCGCGCTGAGCGTGGACCCCGA
GGCCTGCGCGGACCCGTCGGGCTGCGTCTGCGGCAACGCCGAGGTGCAGCCGTGGATCTG
CGCGGCACTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61825873|ref|XP_611049.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825873|ref|XP_611049.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-163, gnl|bosTau2|chr21 (47083789-47083911)
               

               
               41-163, gnl|Hg17|chr14 (102459800-102459922)
               

               
               41-163, gnl|Mm7|chr12 (108788114-108788236)
               


               
               288-505, gnl|bosTau2|chr21 (47091321-47091544)
               

               
               288-505, gnl|Hg17|chr14 (102464842-102465065)
               

               
               288-505, gnl|Mm7|chr12 (108790771-108790994)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-163, gnl|bosTau2|chr21 (47083789-47083911)
               

               
               41-163, gnl|Hg17|chr14 (102459800-102459922)
               

               
               41-163, gnl|Mm7|chr12 (108788114-108788236)
               


               
               288-505, gnl|bosTau2|chr21 (47091321-47091544)
               

               
               288-505, gnl|Hg17|chr14 (102464842-102465065)
               

               
               288-505, gnl|Mm7|chr12 (108790771-108790994)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	41-163, gnl\|bosTau2\|chr21 (47083789-47083911)
	41-163, gnl\|Hg17\|chr14 (102459800-102459922)
	41-163, gnl\|Mm7\|chr12 (108788114-108788236)

	288-505, gnl\|bosTau2\|chr21 (47091321-47091544)
	288-505, gnl\|Hg17\|chr14 (102464842-102465065)
	288-505, gnl\|Mm7\|chr12 (108790771-108790994)