Non-Coding RNA Search

Ss1.1-Mixn-0034n24.5

Sequence:


               
               CCTGGGTAGAGGCCTGGGGCTGCTCTGCAGCCTCAGAGCTCTGAGAGATTTAGATCTTGG
GTGGATACGCTGAGCTTCCTACCAGCCCAGAGCATGTTCCAGATCCCAGAGTTTGAGCAG
AGTGAGCAGGAAGACTCCAGCCCTGCAGACAGGGGCCTGGGCCCCAGCCCCACAGGGGAC
AGACCCCCAGGCCCCAGCAAGCCCTGGCGCACGGCCCCAGGCCACCTGGGGGAAGCTGGT
CACCAGCAGGGGCAGCCGGCCAGCAGCAGCCACCATGGAGGCGCTGGGGCTGTGGAGACC
CGGAGTCGCCACAGCTCTTACCCAGAGGGGACCGAGGAGGATGAAGGGACTGAGGATGAG
GAGCTCAGCCCCTTCCGCGGCCGATCGCTCTCGGCGCCCCCCATCCTCTGGGCTGCACAG
CGTTATGGCCGCGAGCTCCGGAGGATGAGTGACGAGTTCCAGGGTTCCTTCAAGAAGGGA
CTTCCTCGCCCGAAGAGCGCGGGCACAGCGACGCAGATGCGGCAAAGCCCCAGCTGGAAG
CGCTTCCTCCAGTCCTGGTGGTACCGGAACTCGGGGAGAGGAGGCCCCGCCCCCTCCCAA
TGACCTTCCGCCCCACACCGCCGCTGGCGGCCATCCTGGGAATGGGCGGAAGTCTTTTCT
GCAGGCGCCCTTGCAAAAAGAGCCGTTTCGTCCCTTTCGGAAGAAGGCAGTGTGACCCAG
AGGCCGATTCCCTTCCTGTGTGTGCGAGGACCGCGGAAGGGCTCGACCCTCATCGGAAGT
TTTGAAGTTTTTCCGCCCTTAACTGCCGGAAGTGGCCCTGTGACCCCGCCCCCGGCGCTG
GGCTGCCGCAGGCGCCTGCGCCCGTTGCCAGCCGAGATTAACCCTAACGCCGCCAGAGTC
CTTTGCTCAGAGGGAAAGCCGCGGGCCGATGCTCGCTAGGAAACGTGCTAATAAAGCCCG
CGTGTGTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGTAGAGGCCTGGGGCTGCTCTGCAGCCTCAGAGCTCTGAGAGATTTAGATCTTGG
GTGGATACGCTGAGCTTCCTACCAGCCCAGAGCATGTTCCAGATCCCAGAGTTTGAGCAG
AGTGAGCAGGAAGACTCCAGCCCTGCAGACAGGGGCCTGGGCCCCAGCCCCACAGGGGAC
AGACCCCCAGGCCCCAGCAAGCCCTGGCGCACGGCCCCAGGCCACCTGGGGGAAGCTGGT
CACCAGCAGGGGCAGCCGGCCAGCAGCAGCCACCATGGAGGCGCTGGGGCTGTGGAGACC
CGGAGTCGCCACAGCTCTTACCCAGAGGGGACCGAGGAGGATGAAGGGACTGAGGATGAG
GAGCTCAGCCCCTTCCGCGGCCGATCGCTCTCGGCGCCCCCCATCCTCTGGGCTGCACAG
CGTTATGGCCGCGAGCTCCGGAGGATGAGTGACGAGTTCCAGGGTTCCTTCAAGAAGGGA
CTTCCTCGCCCGAAGAGCGCGGGCACAGCGACGCAGATGCGGCAAAGCCCCAGCTGGAAG
CGCTTCCTCCAGTCCTGGTGGTACCGGAACTCGGGGAGAGGAGGCCCCGCCCCCTCCCAA
TGACCTTCCGCCCCACACCGCCGCTGGCGGCCATCCTGGGAATGGGCGGAAGTCTTTTCT
GCAGGCGCCCTTGCAAAAAGAGCCGTTTCGTCCCTTTCGGAAGAAGGCAGTGTGACCCAG
AGGCCGATTCCCTTCCTGTGTGTGCGAGGACCGCGGAAGGGCTCGACCCTCATCGGAAGT
TTTGAAGTTTTTCCGCCCTTAACTGCCGGAAGTGGCCCTGTGACCCCGCCCCCGGCGCTG
GGCTGCCGCAGGCGCCTGCGCCCGTTGCCAGCCGAGATTAACCCTAACGCCGCCAGAGTC
CTTTGCTCAGAGGGAAAGCCGCGGGCCGATGCTCGCTAGGAAACGTGCTAATAAAGCCCG
CGTGTGTGCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45861441|gb|AAS78591.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45861441|gb|AAS78591.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               95-195, - strand, RNAz p=0.98621
               

               
               122-684, + strand, RNAz p=0.986147

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-195, - strand, RNAz p=0.98621
               

               
               122-684, + strand, RNAz p=0.986147

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               83-281, gnl|bosTau2|chr29 (33398958-33398760)
               

               
               83-281, gnl|canFam2|chr18 (55808205-55807847)
               

               
               83-281, gnl|dasNov1|scaffold_136190 (6238-5863)
               

               
               83-281, gnl|echTel1|scaffold_270511 (565-223)
               

               
               83-281, gnl|hg17|chr11 (63808114-63808486)
               

               
               83-281, gnl|Hg17|chr11 (63808427-63808229)
               

               
               83-281, gnl|mm7|chr19 (6763033-6762672)
               

               
               83-281, gnl|Mm7|chr19 (6762728-6762911)
               

               
               83-281, gnl|monDom2|scaffold_491 (19122-18715)
               

               
               83-281, gnl|oryCun1|scaffold_165037 (4138-4492)
               

               
               83-281, gnl|panTro1|chr9 (64796977-64797349)
               

               
               83-281, gnl|rheMac2|chr14 (10143087-10142715)
               

               
               83-281, gnl|rn3|chr1 (209776659-209776298)
               


               
               474-970, gnl|bosTau2|chr29 (33387425-33386932)
               

               
               474-970, gnl|Hg17|chr11 (63794386-63793881)
               

               
               474-970, gnl|Mm7|chr19 (6771259-6771758)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-281, gnl|bosTau2|chr29 (33398958-33398760)
               

               
               83-281, gnl|canFam2|chr18 (55808205-55807847)
               

               
               83-281, gnl|dasNov1|scaffold_136190 (6238-5863)
               

               
               83-281, gnl|echTel1|scaffold_270511 (565-223)
               

               
               83-281, gnl|hg17|chr11 (63808114-63808486)
               

               
               83-281, gnl|Hg17|chr11 (63808427-63808229)
               

               
               83-281, gnl|mm7|chr19 (6763033-6762672)
               

               
               83-281, gnl|Mm7|chr19 (6762728-6762911)
               

               
               83-281, gnl|monDom2|scaffold_491 (19122-18715)
               

               
               83-281, gnl|oryCun1|scaffold_165037 (4138-4492)
               

               
               83-281, gnl|panTro1|chr9 (64796977-64797349)
               

               
               83-281, gnl|rheMac2|chr14 (10143087-10142715)
               

               
               83-281, gnl|rn3|chr1 (209776659-209776298)
               


               
               474-970, gnl|bosTau2|chr29 (33387425-33386932)
               

               
               474-970, gnl|Hg17|chr11 (63794386-63793881)
               

               
               474-970, gnl|Mm7|chr19 (6771259-6771758)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               elu (0.385356)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	95-195, - strand, RNAz p=0.98621
	122-684, + strand, RNAz p=0.986147

	83-281, gnl\|bosTau2\|chr29 (33398958-33398760)
	83-281, gnl\|canFam2\|chr18 (55808205-55807847)
	83-281, gnl\|dasNov1\|scaffold_136190 (6238-5863)
	83-281, gnl\|echTel1\|scaffold_270511 (565-223)
	83-281, gnl\|hg17\|chr11 (63808114-63808486)
	83-281, gnl\|Hg17\|chr11 (63808427-63808229)
	83-281, gnl\|mm7\|chr19 (6763033-6762672)
	83-281, gnl\|Mm7\|chr19 (6762728-6762911)
	83-281, gnl\|monDom2\|scaffold_491 (19122-18715)
	83-281, gnl\|oryCun1\|scaffold_165037 (4138-4492)
	83-281, gnl\|panTro1\|chr9 (64796977-64797349)
	83-281, gnl\|rheMac2\|chr14 (10143087-10142715)
	83-281, gnl\|rn3\|chr1 (209776659-209776298)

	474-970, gnl\|bosTau2\|chr29 (33387425-33386932)
	474-970, gnl\|Hg17\|chr11 (63794386-63793881)
	474-970, gnl\|Mm7\|chr19 (6771259-6771758)

	elu (0.385356)
	fce (0.271592)
	fcc (0.197785)
	eje (0.197668)
	nep (0.183925)
	hlv (0.139256)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)