Ss1.1-Mixn-0034o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTCCTGCCCGTTTCTCCAGAACCAGCCCCAGAGACCACCCACCCACCATGTCGGACG AGGAAGTAGAACACGTCGAGGAAGAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAAGCGC CCCCCCCGCCTGCAGAAGTCCATGAGGTCCATGAAGAAGTCCATGAAGTTCATGAACCAG AGGAGAAGCCGAGACCCAAACTCACTGCTCCTAAGATCCCGGAAGGGGAGAAAGTCGACT TTGATGACATCCAGAAGAAGCGCCAGAATAAGGACCTTATGGAGCTGCAGGCCCTCATCG ACAGCCACTTCGAGGCTCGGAAGAAGGAGGAAGAGGAGCTGGTCGCTCTCAAGGAGAGAA TCGAGAAGCGCCGTGCCGAGAGAGCCGAGCAGCAGAGGATCCGGGCTGAGAAGGAGCGGG AGCGCCAGAACAGGCTGGCGGAGGAGAAGGCCCGGCGGGAGGAGGAGGAAGCCAAGAGAA GGGCGGAGGACGACCTGAAGAAAAAGAAGGCGCTGTCCTCCATGGGCGCCAACTACAGCA GCTACCTGGCCAAGGCCGATCAGAAGCGAGGCAAGAAGCAGACGGCCCGGGAGATGAAGA AGAAGGTGCTGGCCGAGCGGAGGAAGCCCCTCAACATCGACCACCTCAGTGAGGACAAGC TGAGGGACAAGGCCAAGGAGCTCTGGGACGCCCTGTACCAGCTGGAGATTGACAAGTTCG AGTACGGGGAGAAGCTGAAGCGCCAGAAATACGACATCATCAACCTCAGAAGCCGCATCG ACCAGGCCCAGAAGCACAGCAAGAAGGCCGGGACGACGCCCAAGGGCAAGGTTGGCGGAA GGTGGAAGTAACGTGGCTGAAGAGATTCCCAGAGGCAGAGACCCACACGGTGGCATCTGG CCCCGGCAGCCCTGCGTCTCTATCCTCGCTCCCCACCTTCTGGGGTCTGTGAATAAAGCT ACCAGACTCCCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTCCTGCCCGTTTCTCCAGAACCAGCCCCAGAGACCACCCACCCACCATGTCGGACG AGGAAGTAGAACACGTCGAGGAAGAGTACGAGGAGGAAGAAGAGGCCCAGGAGGAAGCGC CCCCCCCGCCTGCAGAAGTCCATGAGGTCCATGAAGAAGTCCATGAAGTTCATGAACCAG AGGAGAAGCCGAGACCCAAACTCACTGCTCCTAAGATCCCGGAAGGGGAGAAAGTCGACT TTGATGACATCCAGAAGAAGCGCCAGAATAAGGACCTTATGGAGCTGCAGGCCCTCATCG ACAGCCACTTCGAGGCTCGGAAGAAGGAGGAAGAGGAGCTGGTCGCTCTCAAGGAGAGAA TCGAGAAGCGCCGTGCCGAGAGAGCCGAGCAGCAGAGGATCCGGGCTGAGAAGGAGCGGG AGCGCCAGAACAGGCTGGCGGAGGAGAAGGCCCGGCGGGAGGAGGAGGAAGCCAAGAGAA GGGCGGAGGACGACCTGAAGAAAAAGAAGGCGCTGTCCTCCATGGGCGCCAACTACAGCA GCTACCTGGCCAAGGCCGATCAGAAGCGAGGCAAGAAGCAGACGGCCCGGGAGATGAAGA AGAAGGTGCTGGCCGAGCGGAGGAAGCCCCTCAACATCGACCACCTCAGTGAGGACAAGC TGAGGGACAAGGCCAAGGAGCTCTGGGACGCCCTGTACCAGCTGGAGATTGACAAGTTCG AGTACGGGGAGAAGCTGAAGCGCCAGAAATACGACATCATCAACCTCAGAAGCCGCATCG ACCAGGCCCAGAAGCACAGCAAGAAGGCCGGGACGACGCCCAAGGGCAAGGTTGGCGGAA GGTGGAAGTAACGTGGCTGAAGAGATTCCCAGAGGCAGAGACCCACACGGTGGCATCTGG CCCCGGCAGCCCTGCGTCTCTATCCTCGCTCCCCACCTTCTGGGGTCTGTGAATAAAGCT ACCAGACTCCCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 246-366, gnl|bosTau2|chr18 (55287327-55287207) | |
| 246-366, gnl|canFam2|chr1 (105561271-105561148) | |
| 246-366, gnl|danRer3|chr3 (28418060-28417937) | |
| 246-366, gnl|dasNov1|scaffold_288774 (1153-1030) | |
| 246-366, gnl|echTel1|scaffold_270322 (2378-2501) | |
| 246-366, gnl|fr1|chrUn (26982503-26982380) | |
| 246-366, gnl|galGal2|chr32 (319874-319997) | |
| 246-366, gnl|hg17|chr19 (60344362-60344485) | |
| 246-366, gnl|Hg17|chr19 (60344482-60344362) | |
| 246-366, gnl|loxAfr1|scaffold_58296 (2303-2424) | |
| 246-366, gnl|mm7|chr7 (4082438-4082561) | |
| 246-366, gnl|Mm7|chr7 (4082558-4082438) | |
| 246-366, gnl|monDom2|scaffold_393 (78768-78645) | |
| 246-366, gnl|oryCun1|scaffold_130692 (785-908) | |
| 246-366, gnl|panTro1|chr20 (57767080-57767203) | |
| 246-366, gnl|rheMac2|chr19 (61146393-61146516) | |
| 246-366, gnl|rn3|chr1 (68118874-68118751) | |
| 246-366, gnl|tetNig1|chr15 (7204596-7204474) | |
| 246-366, gnl|xenTro1|scaffold_374 (466395-466518) | |
| 553-665, gnl|bosTau2|chr29 (44121034-44121146) | |
| 553-665, gnl|canFam2|chr18 (49167225-49167354) | |
| 553-665, gnl|danRer3|chr7 (34687086-34686947) | |
| 553-665, gnl|echTel1|scaffold_299334 (5801-5671) | |
| 553-665, gnl|fr1|chrUn (237850288-237850438) | |
| 553-665, gnl|galGal2|chr5 (11574003-11573810) | |
| 553-665, gnl|hg17|chr11 (1912332-1912467) | |
| 553-665, gnl|Hg17|chr11 (1912350-1912462) | |
| 553-665, gnl|mm7|chr7 (138939518-138939651) | |
| 553-665, gnl|Mm7|chr7 (138939534-138939646) | |
| 553-665, gnl|monDom2|scaffold_393 (80114-80249) | |
| 553-665, gnl|oryCun1|scaffold_130106 (102-236) | |
| 553-665, gnl|panTro1|chr9 (2081031-2081166) | |
| 553-665, gnl|rheMac2|chr14 (1823123-1823258) | |
| 553-665, gnl|rn3|chr1 (202918858-202918991) | |
| 553-665, gnl|tetNig1|chrUn_random (26158867-26159036) | |
| 553-665, gnl|xenTro1|scaffold_389 (660837-660972) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 246-366, gnl|bosTau2|chr18 (55287327-55287207) | |
| 246-366, gnl|canFam2|chr1 (105561271-105561148) | |
| 246-366, gnl|danRer3|chr3 (28418060-28417937) | |
| 246-366, gnl|dasNov1|scaffold_288774 (1153-1030) | |
| 246-366, gnl|echTel1|scaffold_270322 (2378-2501) | |
| 246-366, gnl|fr1|chrUn (26982503-26982380) | |
| 246-366, gnl|galGal2|chr32 (319874-319997) | |
| 246-366, gnl|hg17|chr19 (60344362-60344485) | |
| 246-366, gnl|Hg17|chr19 (60344482-60344362) | |
| 246-366, gnl|loxAfr1|scaffold_58296 (2303-2424) | |
| 246-366, gnl|mm7|chr7 (4082438-4082561) | |
| 246-366, gnl|Mm7|chr7 (4082558-4082438) | |
| 246-366, gnl|monDom2|scaffold_393 (78768-78645) | |
| 246-366, gnl|oryCun1|scaffold_130692 (785-908) | |
| 246-366, gnl|panTro1|chr20 (57767080-57767203) | |
| 246-366, gnl|rheMac2|chr19 (61146393-61146516) | |
| 246-366, gnl|rn3|chr1 (68118874-68118751) | |
| 246-366, gnl|tetNig1|chr15 (7204596-7204474) | |
| 246-366, gnl|xenTro1|scaffold_374 (466395-466518) | |
| 553-665, gnl|bosTau2|chr29 (44121034-44121146) | |
| 553-665, gnl|canFam2|chr18 (49167225-49167354) | |
| 553-665, gnl|danRer3|chr7 (34687086-34686947) | |
| 553-665, gnl|echTel1|scaffold_299334 (5801-5671) | |
| 553-665, gnl|fr1|chrUn (237850288-237850438) | |
| 553-665, gnl|galGal2|chr5 (11574003-11573810) | |
| 553-665, gnl|hg17|chr11 (1912332-1912467) | |
| 553-665, gnl|Hg17|chr11 (1912350-1912462) | |
| 553-665, gnl|mm7|chr7 (138939518-138939651) | |
| 553-665, gnl|Mm7|chr7 (138939534-138939646) | |
| 553-665, gnl|monDom2|scaffold_393 (80114-80249) | |
| 553-665, gnl|oryCun1|scaffold_130106 (102-236) | |
| 553-665, gnl|panTro1|chr9 (2081031-2081166) | |
| 553-665, gnl|rheMac2|chr14 (1823123-1823258) | |
| 553-665, gnl|rn3|chr1 (202918858-202918991) | |
| 553-665, gnl|tetNig1|chrUn_random (26158867-26159036) | |
| 553-665, gnl|xenTro1|scaffold_389 (660837-660972) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| mas (14.3007) | |
| nms (9.19589) | |
| nep (3.12672) | |
| ton (2.9835) | |
| ldo (2.81308) | |
| sme (2.74893) | |
| ssp (2.30384) | |
| ese (1.77103) | |
| eye (1.19352) | |
| ste (1.08167) | |
| nca (0.958117) | |
| jca (0.797721) | |
| tbr (0.770891) | |
| bfe (0.599431) | |
| ctl (0.459207) | |
| eru (0.240096) | |
| col (0.195008) | |
| cki (0.165235) | |
| mga (0.160205) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (14.3007) | |
| nms (9.19589) | |
| nep (3.12672) | |
| ton (2.9835) | |
| ldo (2.81308) | |
| sme (2.74893) | |
| ssp (2.30384) | |
| ese (1.77103) | |
| eye (1.19352) | |
| ste (1.08167) | |
| nca (0.958117) | |
| jca (0.797721) | |
| tbr (0.770891) | |
| bfe (0.599431) | |
| ctl (0.459207) | |
| eru (0.240096) | |
| col (0.195008) | |
| cki (0.165235) | |
| mga (0.160205) |