Non-Coding RNA Search

Ss1.1-Mixn-0034o23.5

Sequence:


               
               CCCAGGCGGGGGCACGGGAGGGGCTGGCCCAGGGGCCTGGGCACTGTACAGACCGCCCCC
GCATCCTTGGGGCCTTCCACGTTATTTATTACCCGACCACCGCCGCCTGCCTGCCCTGCC
TCCCTCCCAGCCAGAGGCTGCTGCTGTCACCCCCTCTCCACTTCAGTGCATGTCTTAGTT
GCTGTCCCCGCAGCTCCCAGCTCCTCCTCGGGGGTCCGGCTTCTGTCTCTGCTGTCCCAG
TTTTGAGGTTTGGTTTCTCGTTTCTCTCTGTCTCCTGCTTTCAGGCTCCTCCCTCCCACC
CCTCCCCGACTTCCCCCAGCAGCTGGGGGAGGAGAGGGGGCGTAACTTCTGACACCTGTG
CCTCAGATCTCTTCCACCCCATCAGGAGGGTTCTGTTTGCCCCAGACCGGGGCCCAGGAC
CTGATATTTGAGGTTTGTTCTTTGGGAGAGGGGTGGGCCAGAGGGAACCTTGGTCTGGAG
TTCACTCAGGCCTCCGGCGGCCCACAGGGGAGCGAAACCAGTTCCCAGACAACAGGCCAC
TAGAGGGCTTGGAAGAGAGGCCAGGCTAGGGGCCAGGTCAGGAGAGACTTGTCGTAGCTG
GAGGATGAGTGGAAGCCAGAGATGTGGGCTACGAGGCAGTCACCTTCTCTCTCTCTCCTC
TCACCCACACCTGCCTCTTTCTCATCCCTGCTCCCCACCCTGCAGGATGGTTTGTCTGTC
AGAGGTGCTGCCCAAGTGCTCCCTAGGCATCAAGACTCCTGAGGCTCTGGACAGTCGGCT
CCCCTCGTCATGGGAGCCTCAGCCACGACTCAGGAGCTGTCACGGGGCCTTGGAGCTGCT
GGGCAGCATGTTGTCGTATTTGAACCAAAAGACAGTTTCAAATTGAAAAGTGAAATAATC
TGAATTTCCCAAGTGCCTGCACCATGCACTCCCCTTGTCAGAGCCCGTTTTCGTGCTACG
GCATAGCCTGGGCCAGAGGCTCAGAAGGGACACAGCCAGCTTAGGGAAGGGGTGGCCAAG
GAAAATGGTATAGGTCAAGGCGGCTGTGCGACCACCTCCCCCTGCCCTTCCCACCCCCAG
ACACCTCTCTCCCTCACCTGTTTTTGCTGTGGCTGTAAAGGTATTTCCCCTCTGCCCTAC
TCCCTGCCATGTCTTTACCCCGGGATCCTGTTTGGGGCCTGGGGTAGGGGTTCCTGGGGC
TGGTCTTAGGAGGGTGCTGGCTGCAGACTGCCTTGTACCCCCTGGACACCCTCACATGGG
TTTTTCTGTGTTATTTCATAAGACTCTTTGAAGTCCAATAAAGCATGTAGGAGATTTTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGCGGGGGCACGGGAGGGGCTGGCCCAGGGGCCTGGGCACTGTACAGACCGCCCCC
GCATCCTTGGGGCCTTCCACGTTATTTATTACCCGACCACCGCCGCCTGCCTGCCCTGCC
TCCCTCCCAGCCAGAGGCTGCTGCTGTCACCCCCTCTCCACTTCAGTGCATGTCTTAGTT
GCTGTCCCCGCAGCTCCCAGCTCCTCCTCGGGGGTCCGGCTTCTGTCTCTGCTGTCCCAG
TTTTGAGGTTTGGTTTCTCGTTTCTCTCTGTCTCCTGCTTTCAGGCTCCTCCCTCCCACC
CCTCCCCGACTTCCCCCAGCAGCTGGGGGAGGAGAGGGGGCGTAACTTCTGACACCTGTG
CCTCAGATCTCTTCCACCCCATCAGGAGGGTTCTGTTTGCCCCAGACCGGGGCCCAGGAC
CTGATATTTGAGGTTTGTTCTTTGGGAGAGGGGTGGGCCAGAGGGAACCTTGGTCTGGAG
TTCACTCAGGCCTCCGGCGGCCCACAGGGGAGCGAAACCAGTTCCCAGACAACAGGCCAC
TAGAGGGCTTGGAAGAGAGGCCAGGCTAGGGGCCAGGTCAGGAGAGACTTGTCGTAGCTG
GAGGATGAGTGGAAGCCAGAGATGTGGGCTACGAGGCAGTCACCTTCTCTCTCTCTCCTC
TCACCCACACCTGCCTCTTTCTCATCCCTGCTCCCCACCCTGCAGGATGGTTTGTCTGTC
AGAGGTGCTGCCCAAGTGCTCCCTAGGCATCAAGACTCCTGAGGCTCTGGACAGTCGGCT
CCCCTCGTCATGGGAGCCTCAGCCACGACTCAGGAGCTGTCACGGGGCCTTGGAGCTGCT
GGGCAGCATGTTGTCGTATTTGAACCAAAAGACAGTTTCAAATTGAAAAGTGAAATAATC
TGAATTTCCCAAGTGCCTGCACCATGCACTCCCCTTGTCAGAGCCCGTTTTCGTGCTACG
GCATAGCCTGGGCCAGAGGCTCAGAAGGGACACAGCCAGCTTAGGGAAGGGGTGGCCAAG
GAAAATGGTATAGGTCAAGGCGGCTGTGCGACCACCTCCCCCTGCCCTTCCCACCCCCAG
ACACCTCTCTCCCTCACCTGTTTTTGCTGTGGCTGTAAAGGTATTTCCCCTCTGCCCTAC
TCCCTGCCATGTCTTTACCCCGGGATCCTGTTTGGGGCCTGGGGTAGGGGTTCCTGGGGC
TGGTCTTAGGAGGGTGCTGGCTGCAGACTGCCTTGTACCCCCTGGACACCCTCACATGGG
TTTTTCTGTGTTATTTCATAAGACTCTTTGAAGTCCAATAAAGCATGTAGGAGATTTTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               236-376, - strand, RNAz p=0.714413
               

               
               413-874, - strand, RNAz p=0.999972
               

               
               994-1105, - strand, RNAz p=0.924988
               

               
               1145-1301, - strand, RNAz p=0.992252

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-376, - strand, RNAz p=0.714413
               

               
               413-874, - strand, RNAz p=0.999972
               

               
               994-1105, - strand, RNAz p=0.924988
               

               
               1145-1301, - strand, RNAz p=0.992252

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               623-729, - strand, RNAmicro p=0.999969

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               623-729, - strand, RNAmicro p=0.999969

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               792-874, POSM0605007_P20R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898119.1|), blast E-value=3e-30, identity=96.39%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               792-874, POSM0605007_P20R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898119.1|), blast E-value=3e-30, identity=96.39%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr15 (33152630-33153946)
               

               
               1-1320, gnl|Hg17|chr11 (4069692-4071011)
               

               
               1-1320, gnl|Mm7|chr7 (98482087-98483413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr15 (33152630-33153946)
               

               
               1-1320, gnl|Hg17|chr11 (4069692-4071011)
               

               
               1-1320, gnl|Mm7|chr7 (98482087-98483413)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.543183)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	236-376, - strand, RNAz p=0.714413
	413-874, - strand, RNAz p=0.999972
	994-1105, - strand, RNAz p=0.924988
	1145-1301, - strand, RNAz p=0.992252

	1-1320, gnl\|bosTau2\|chr15 (33152630-33153946)
	1-1320, gnl\|Hg17\|chr11 (4069692-4071011)
	1-1320, gnl\|Mm7\|chr7 (98482087-98483413)

	fce (0.543183)
	ece (0.229305)
	mas (0.210305)
	fcc (0.197785)
	col (0.195008)
	clu (0.119646)
	jca (0.11396)