Ss1.1-Mixn-0035a13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCCCGTGCCCGTGGTGGACCACAAGAACGGCACATACGAGCTGGTGTACACGGCGCG CACCGAGGGCGAGCTGCTCCTCTCGGTGCTGCTCTACGGCCAGCCAGTGCGCGGCAGCCC CTTCCGCGTGCGTGCCCTGCGTCCCGGGGACCTGCCACCGTCTCCGGACGACGTCAAGCG CCGCGTCAAGTCCCCCGGAGGCCCGGGCAGCCACGTGCGCCAGAAGGCGGTGCGTAGGCC CAGCTCCATGTACAGCACCGGCGGCAAACGGAAGGACAACCCCATCGAGGACGAGCTTGT CTTCCGCGTTGGCAGTCGTGGAAGGGAGAAGGGCGAATTCACCAATTTACAGGGTGTGTC GGCAGCCAGCAGCGGCCGCATAGTGGTGGCAGACAGCAACAACCAATGCATCCAGGTTTT CTCCAATGAAGGCCAGTTCAAGTTCCGTTTTGGGGTCCGAGGGCGCTCCCCCGGGCAGCT GCAGCGCCCCACAGGTGTGGCCGTGGACACCAATGGAGACATCATCGTGGCAGACTACGA CAACCGCTGGGTCAGCATCTTCTCCCCCGAGGGCAAGTTCAAGACCAAGATTGGGGCTGG CCGCCTCATGGGCCCCAAGGGAGTGGCCGTGGACCGGAACGGACACATCATCGTGGTGGA CAACAAGTCCTGCTGCGTCTTCACCTTCCAGCCCAATGGCAAGCTGGTTGGCCGTTTTGG GGGCCGTGGGGCCACTGATCGCCACTTCGCAGGGCCCCATTTCGTGGCCGTGAACAACAA GAACGAGATTGTGGTGACGGATTTCCACAACCATTCGGTGAAGGTCAGTGGCCACCCTCC TTCCGTGCGCGCGTCCCCAGCCCTTCCTCTTCCACAGGCTCCTCGCTCCCTCACCTCCTC CCCATCGAGCTTGTTCCCGAGAGCCGGAAACCTTTACCACGTGGCTGTCATGCCAGGCAC GGTGCGGAGGCTGGGGACACAGCGCTGAACACGGCACACACGTCCCCCCTCTTCCTGGGT CTCACGGGGAGAGGGAGGACCTGGGAGGTCACGGGAGGACGTGGTTGATCCTGTGCTGGG GACCTGGGCAGGGGGGTGCCTAGCAGGAGCCCTTGAATCAGGTGAGGCTGAGAACGGCCT AAAGCTCAAGAGGGAATGAACCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCCCGTGCCCGTGGTGGACCACAAGAACGGCACATACGAGCTGGTGTACACGGCGCG CACCGAGGGCGAGCTGCTCCTCTCGGTGCTGCTCTACGGCCAGCCAGTGCGCGGCAGCCC CTTCCGCGTGCGTGCCCTGCGTCCCGGGGACCTGCCACCGTCTCCGGACGACGTCAAGCG CCGCGTCAAGTCCCCCGGAGGCCCGGGCAGCCACGTGCGCCAGAAGGCGGTGCGTAGGCC CAGCTCCATGTACAGCACCGGCGGCAAACGGAAGGACAACCCCATCGAGGACGAGCTTGT CTTCCGCGTTGGCAGTCGTGGAAGGGAGAAGGGCGAATTCACCAATTTACAGGGTGTGTC GGCAGCCAGCAGCGGCCGCATAGTGGTGGCAGACAGCAACAACCAATGCATCCAGGTTTT CTCCAATGAAGGCCAGTTCAAGTTCCGTTTTGGGGTCCGAGGGCGCTCCCCCGGGCAGCT GCAGCGCCCCACAGGTGTGGCCGTGGACACCAATGGAGACATCATCGTGGCAGACTACGA CAACCGCTGGGTCAGCATCTTCTCCCCCGAGGGCAAGTTCAAGACCAAGATTGGGGCTGG CCGCCTCATGGGCCCCAAGGGAGTGGCCGTGGACCGGAACGGACACATCATCGTGGTGGA CAACAAGTCCTGCTGCGTCTTCACCTTCCAGCCCAATGGCAAGCTGGTTGGCCGTTTTGG GGGCCGTGGGGCCACTGATCGCCACTTCGCAGGGCCCCATTTCGTGGCCGTGAACAACAA GAACGAGATTGTGGTGACGGATTTCCACAACCATTCGGTGAAGGTCAGTGGCCACCCTCC TTCCGTGCGCGCGTCCCCAGCCCTTCCTCTTCCACAGGCTCCTCGCTCCCTCACCTCCTC CCCATCGAGCTTGTTCCCGAGAGCCGGAAACCTTTACCACGTGGCTGTCATGCCAGGCAC GGTGCGGAGGCTGGGGACACAGCGCTGAACACGGCACACACGTCCCCCCTCTTCCTGGGT CTCACGGGGAGAGGGAGGACCTGGGAGGTCACGGGAGGACGTGGTTGATCCTGTGCTGGG GACCTGGGCAGGGGGGTGCCTAGCAGGAGCCCTTGAATCAGGTGAGGCTGAGAACGGCCT AAAGCTCAAGAGGGAATGAACCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 790-899, - strand, RNAz p=0.85665 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 790-899, - strand, RNAz p=0.85665 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 2-312, gnl|bosTau2|chr15 (28728758-28728448) | |
| 2-312, gnl|canFam2|chr21 (32961593-32962070) | |
| 2-312, gnl|danRer3|chr10 (18264494-18264017) | |
| 2-312, gnl|dasNov1|scaffold_43638 (7672-7204) | |
| 2-312, gnl|echTel1|scaffold_194444 (3202-2725) | |
| 2-312, gnl|fr1|chrUn (13562130-13561658) | |
| 2-312, gnl|galGal2|chr4 (20462113-20461645) | |
| 2-312, gnl|hg17|chr11 (6434101-6434578) | |
| 2-312, gnl|Hg17|chr11 (6434412-6434102) | |
| 2-312, gnl|loxAfr1|scaffold_27991 (30733-31201) | |
| 2-312, gnl|mm7|chr7 (101674161-101674638) | |
| 2-312, gnl|Mm7|chr7 (101674472-101674162) | |
| 2-312, gnl|monDom2|scaffold_43 (18656183-18655706) | |
| 2-312, gnl|oryCun1|scaffold_172930 (54769-55243) | |
| 2-312, gnl|panTro1|chr9 (6576759-6577236) | |
| 2-312, gnl|rheMac2|chr14 (65747360-65746883) | |
| 2-312, gnl|rn3|chr1 (163440365-163440842) | |
| 2-312, gnl|tetNig1|chr16 (4944980-4945454) | |
| 2-312, gnl|xenTro1|scaffold_1305 (3336-3804) | |
| 411-583, gnl|bosTau2|chr15 (28722867-28722695) | |
| 411-583, gnl|canFam2|chr21 (32956050-32956196) | |
| 411-583, gnl|danRer3|chr10 (18267098-18266951) | |
| 411-583, gnl|dasNov1|scaffold_196011 (414-268) | |
| 411-583, gnl|echTel1|scaffold_311388 (84499-84645) | |
| 411-583, gnl|fr1|chrUn (13562660-13562512) | |
| 411-583, gnl|galGal2|chr4 (20471079-20470934) | |
| 411-583, gnl|hg17|chr11 (6429074-6429221) | |
| 411-583, gnl|Hg17|chr11 (6429249-6429077) | |
| 411-583, gnl|loxAfr1|scaffold_59816 (1195-1340) | |
| 411-583, gnl|mm7|chr7 (101669668-101669814) | |
| 411-583, gnl|Mm7|chr7 (101669842-101669670) | |
| 411-583, gnl|monDom2|scaffold_43 (18657171-18657025) | |
| 411-583, gnl|oryCun1|scaffold_172930 (50417-50563) | |
| 411-583, gnl|panTro1|chr9 (6571725-6571871) | |
| 411-583, gnl|rheMac2|chr14 (65752398-65752252) | |
| 411-583, gnl|rn3|chr1 (163435899-163436045) | |
| 411-583, gnl|tetNig1|chr16 (4944541-4944688) | |
| 411-583, gnl|xenTro1|scaffold_1305 (1688-1835) | |
| 750-1163, gnl|bosTau2|chr15 (28722094-28721653) | |
| 750-1163, gnl|Hg17|chr11 (6428430-6427979) | |
| 750-1163, gnl|Mm7|chr7 (101669101-101668680) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-312, gnl|bosTau2|chr15 (28728758-28728448) | |
| 2-312, gnl|canFam2|chr21 (32961593-32962070) | |
| 2-312, gnl|danRer3|chr10 (18264494-18264017) | |
| 2-312, gnl|dasNov1|scaffold_43638 (7672-7204) | |
| 2-312, gnl|echTel1|scaffold_194444 (3202-2725) | |
| 2-312, gnl|fr1|chrUn (13562130-13561658) | |
| 2-312, gnl|galGal2|chr4 (20462113-20461645) | |
| 2-312, gnl|hg17|chr11 (6434101-6434578) | |
| 2-312, gnl|Hg17|chr11 (6434412-6434102) | |
| 2-312, gnl|loxAfr1|scaffold_27991 (30733-31201) | |
| 2-312, gnl|mm7|chr7 (101674161-101674638) | |
| 2-312, gnl|Mm7|chr7 (101674472-101674162) | |
| 2-312, gnl|monDom2|scaffold_43 (18656183-18655706) | |
| 2-312, gnl|oryCun1|scaffold_172930 (54769-55243) | |
| 2-312, gnl|panTro1|chr9 (6576759-6577236) | |
| 2-312, gnl|rheMac2|chr14 (65747360-65746883) | |
| 2-312, gnl|rn3|chr1 (163440365-163440842) | |
| 2-312, gnl|tetNig1|chr16 (4944980-4945454) | |
| 2-312, gnl|xenTro1|scaffold_1305 (3336-3804) | |
| 411-583, gnl|bosTau2|chr15 (28722867-28722695) | |
| 411-583, gnl|canFam2|chr21 (32956050-32956196) | |
| 411-583, gnl|danRer3|chr10 (18267098-18266951) | |
| 411-583, gnl|dasNov1|scaffold_196011 (414-268) | |
| 411-583, gnl|echTel1|scaffold_311388 (84499-84645) | |
| 411-583, gnl|fr1|chrUn (13562660-13562512) | |
| 411-583, gnl|galGal2|chr4 (20471079-20470934) | |
| 411-583, gnl|hg17|chr11 (6429074-6429221) | |
| 411-583, gnl|Hg17|chr11 (6429249-6429077) | |
| 411-583, gnl|loxAfr1|scaffold_59816 (1195-1340) | |
| 411-583, gnl|mm7|chr7 (101669668-101669814) | |
| 411-583, gnl|Mm7|chr7 (101669842-101669670) | |
| 411-583, gnl|monDom2|scaffold_43 (18657171-18657025) | |
| 411-583, gnl|oryCun1|scaffold_172930 (50417-50563) | |
| 411-583, gnl|panTro1|chr9 (6571725-6571871) | |
| 411-583, gnl|rheMac2|chr14 (65752398-65752252) | |
| 411-583, gnl|rn3|chr1 (163435899-163436045) | |
| 411-583, gnl|tetNig1|chr16 (4944541-4944688) | |
| 411-583, gnl|xenTro1|scaffold_1305 (1688-1835) | |
| 750-1163, gnl|bosTau2|chr15 (28722094-28721653) | |
| 750-1163, gnl|Hg17|chr11 (6428430-6427979) | |
| 750-1163, gnl|Mm7|chr7 (101669101-101668680) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nco (0.161734) | |
| pla (0.133672) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nco (0.161734) | |
| pla (0.133672) | |
| eep (0.122564) |