Non-Coding RNA Search

Ss1.1-Mixn-0035b18.5

Sequence:


               
               TCCGTCCAATTTGGAAAGCGCTTTGAGCCCAGTGCAGCTTCGCTGCGTGTTACTTCTGCT
GCTCTTCCTGCACTGCGCCCCGCTCGACCCTGCGATGCCAGTGGACCTCGGCAAGTGGTC
CGGGCCCTTGAGCCTGCAGGAAGTGGACGAGCGGCCACAGCACCCGCTGCAGGTCAAATA
CGGCGGGGCTGAGGTCGACGAGCTGGGCAAAGTGCTGACACCTACCCAGGTTAAGAGCAG
GCCCACCAGCATTACATGGGATGGACTGAATCCAGATAAACTCTACACCTTGGTCTTGAC
AGACCCGGATGCTCCCAGCAGGAAGGACCCCAAATACAGGGAATGGCACCATTTCCTGGT
GGTCAACATGAAGGGCAACGACATCAGCAGTGGCACAGTCCTCTCCGATTATGTGGGCTC
TGGGCCTCCCAAGGGCACAGGCCTTCACCGCTATGTCTGGCTGGTTTACGAGCAGGACGG
GCCGTTGAAGTGTGACGAGCCCATCCTCAGCAACCGATCTGGAGACCACCGTGGCAAATT
CAAGGTGGCGTCTTTCCGCAAAAAGTACCAGCTTGGGGCCCCGGTGGCCGGCACATGTTA
CCAGGCAGAATGGGACGACTATGTGCCTAAACTCTACGAGCAGCTTTCTGGGAAGTAGAG
GAAAGCCAGGAGATGGAAATCATCCCAGAGCTCCCAAGCAGTGTTTCAGTTTAGTGATGC
ATGTGGGTTTCTCCCCTTTCCCTCTTCCTGAGTAGTCAGATTTAGGTTAGGGTGAATTTT
CCTTCTGCCTGTCCTCTCTAACTCTAGGGGGTTTGTGTTCTGCTCAAATTTGAACTCCAC
TTGGGGTGGGGGGTATTTTGGTACTATGTTGGGGTCATCAAAATGTTAATAGAAGAATAG
CAACCCAGACTTTAAAGAAGAAAAAAAATTCTGGTTAAAAGACCAGGTCTACAGTATTAG
AACATCAAAGACTGTAAGGGAAGTTGAAAAAAAGAGCAGATTTGTTACCTCCACCTTTAT
GAGCTTGAATCCAGAATTGTCTGTGATGGCATCTTCTGGCCTGTGTTTTCACAGCCCTGT
CTCACCAACATGACCAGAGGCTGTCAGGTCCGCTGACCCCCAACGTGGCACACAGCTCAG
GCTGGTTACTGGGTGTTAGTATCCTACTCTTGCTCCTTTAAAGAGCAATACTGGAAAAAG
GAATAGGGAGAGAGTCACTTTGCTGTTAAAGCCCAGCCATCTGGATGAGCTACAGGGCTG
GGTTGAGGAGGTTATCAGAAATCTGAAAGTCTGTGCCTGTTAAATTGATCACTTTTCTTT
GATGTGAGGAAAGCTAGTCTGGAGTTGCTAAGCATTGCTTTAATTCTGCTGTTTGCTTAT
AGTTGAACAAAAATAAAAACATTGTGTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGTCCAATTTGGAAAGCGCTTTGAGCCCAGTGCAGCTTCGCTGCGTGTTACTTCTGCT
GCTCTTCCTGCACTGCGCCCCGCTCGACCCTGCGATGCCAGTGGACCTCGGCAAGTGGTC
CGGGCCCTTGAGCCTGCAGGAAGTGGACGAGCGGCCACAGCACCCGCTGCAGGTCAAATA
CGGCGGGGCTGAGGTCGACGAGCTGGGCAAAGTGCTGACACCTACCCAGGTTAAGAGCAG
GCCCACCAGCATTACATGGGATGGACTGAATCCAGATAAACTCTACACCTTGGTCTTGAC
AGACCCGGATGCTCCCAGCAGGAAGGACCCCAAATACAGGGAATGGCACCATTTCCTGGT
GGTCAACATGAAGGGCAACGACATCAGCAGTGGCACAGTCCTCTCCGATTATGTGGGCTC
TGGGCCTCCCAAGGGCACAGGCCTTCACCGCTATGTCTGGCTGGTTTACGAGCAGGACGG
GCCGTTGAAGTGTGACGAGCCCATCCTCAGCAACCGATCTGGAGACCACCGTGGCAAATT
CAAGGTGGCGTCTTTCCGCAAAAAGTACCAGCTTGGGGCCCCGGTGGCCGGCACATGTTA
CCAGGCAGAATGGGACGACTATGTGCCTAAACTCTACGAGCAGCTTTCTGGGAAGTAGAG
GAAAGCCAGGAGATGGAAATCATCCCAGAGCTCCCAAGCAGTGTTTCAGTTTAGTGATGC
ATGTGGGTTTCTCCCCTTTCCCTCTTCCTGAGTAGTCAGATTTAGGTTAGGGTGAATTTT
CCTTCTGCCTGTCCTCTCTAACTCTAGGGGGTTTGTGTTCTGCTCAAATTTGAACTCCAC
TTGGGGTGGGGGGTATTTTGGTACTATGTTGGGGTCATCAAAATGTTAATAGAAGAATAG
CAACCCAGACTTTAAAGAAGAAAAAAAATTCTGGTTAAAAGACCAGGTCTACAGTATTAG
AACATCAAAGACTGTAAGGGAAGTTGAAAAAAAGAGCAGATTTGTTACCTCCACCTTTAT
GAGCTTGAATCCAGAATTGTCTGTGATGGCATCTTCTGGCCTGTGTTTTCACAGCCCTGT
CTCACCAACATGACCAGAGGCTGTCAGGTCCGCTGACCCCCAACGTGGCACACAGCTCAG
GCTGGTTACTGGGTGTTAGTATCCTACTCTTGCTCCTTTAAAGAGCAATACTGGAAAAAG
GAATAGGGAGAGAGTCACTTTGCTGTTAAAGCCCAGCCATCTGGATGAGCTACAGGGCTG
GGTTGAGGAGGTTATCAGAAATCTGAAAGTCTGTGCCTGTTAAATTGATCACTTTTCTTT
GATGTGAGGAAAGCTAGTCTGGAGTTGCTAAGCATTGCTTTAATTCTGCTGTTTGCTTAT
AGTTGAACAAAAATAAAAACATTGTGTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1352725|sp|P13696|PEBP_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1352725|sp|P13696|PEBP_BOVIN

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-1432, gnl|bosTau2|chr28 (30102065-30103475)
               

               
               1-1432, gnl|Hg17|chr2 (85480712-85479267)
               


               
               58-231, gnl|bosTau2|chr17 (32125803-32125630)
               

               
               58-231, gnl|Hg17|chr12 (117036686-117036871)
               

               
               58-231, gnl|Mm7|chr5 (116517261-116517106)
               


               
               438-1414, gnl|bosTau2|chr17 (32122295-32121331)
               

               
               438-1414, gnl|Hg17|chr12 (117045108-117046113)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1432, gnl|bosTau2|chr28 (30102065-30103475)
               

               
               1-1432, gnl|Hg17|chr2 (85480712-85479267)
               


               
               58-231, gnl|bosTau2|chr17 (32125803-32125630)
               

               
               58-231, gnl|Hg17|chr12 (117036686-117036871)
               

               
               58-231, gnl|Mm7|chr5 (116517261-116517106)
               


               
               438-1414, gnl|bosTau2|chr17 (32122295-32121331)
               

               
               438-1414, gnl|Hg17|chr12 (117045108-117046113)

Expressed library(ies): 67 entry(ies)

More info

Expressed library(ies): 67 entry(ies)

Help | Less info


               
               che (2.31734)
               

               
               fcc (2.17563)
               

               
               cki (1.65235)
               

               
               fce (1.62955)
               

               
               pgl (1.54028)
               

               
               ece (1.37583)
               

               
               hyp (1.28553)
               

               
               fbs (1.22742)
               

               
               ebs (1.18301)
               

               
               elu (1.15607)
               

               
               cli (1.06968)
               

               
               cov (1.05722)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               fhi (0.847889)
               

               
               cst (0.840218)
               

               
               ecc (0.690211)
               

               
               jca (0.683761)
               

               
               eye (0.682012)
               

               
               lun (0.601956)
               

               
               eru (0.60024)
               

               
               col (0.585023)
               

               
               cmu (0.55918)
               

               
               fty (0.527519)
               

               
               bla (0.497389)
               

               
               nco (0.485201)
               

               
               nms (0.427716)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)

Expressed library(ies): 67 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (2.31734)
               

               
               fcc (2.17563)
               

               
               cki (1.65235)
               

               
               fce (1.62955)
               

               
               pgl (1.54028)
               

               
               ece (1.37583)
               

               
               hyp (1.28553)
               

               
               fbs (1.22742)
               

               
               ebs (1.18301)
               

               
               elu (1.15607)
               

               
               cli (1.06968)
               

               
               cov (1.05722)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               fhi (0.847889)
               

               
               cst (0.840218)
               

               
               ecc (0.690211)
               

               
               jca (0.683761)
               

               
               eye (0.682012)
               

               
               lun (0.601956)
               

               
               eru (0.60024)
               

               
               col (0.585023)
               

               
               cmu (0.55918)
               

               
               fty (0.527519)
               

               
               bla (0.497389)
               

               
               nco (0.485201)
               

               
               nms (0.427716)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)

	1-1432, gnl\|bosTau2\|chr28 (30102065-30103475)
	1-1432, gnl\|Hg17\|chr2 (85480712-85479267)

	58-231, gnl\|bosTau2\|chr17 (32125803-32125630)
	58-231, gnl\|Hg17\|chr12 (117036686-117036871)
	58-231, gnl\|Mm7\|chr5 (116517261-116517106)

	438-1414, gnl\|bosTau2\|chr17 (32122295-32121331)
	438-1414, gnl\|Hg17\|chr12 (117045108-117046113)

	che (2.31734)
	fcc (2.17563)
	cki (1.65235)
	fce (1.62955)
	pgl (1.54028)
	ece (1.37583)
	hyp (1.28553)
	fbs (1.22742)
	ebs (1.18301)
	elu (1.15607)
	cli (1.06968)
	cov (1.05722)
	ste (0.946458)
	sme (0.91631)
	ldo (0.873024)
	fhi (0.847889)
	cst (0.840218)
	ecc (0.690211)
	jca (0.683761)
	eye (0.682012)
	lun (0.601956)
	eru (0.60024)
	col (0.585023)
	cmu (0.55918)
	fty (0.527519)
	bla (0.497389)
	nco (0.485201)
	nms (0.427716)
	csk (0.422238)
	amn (0.417711)
	aor (0.390549)
	eep (0.367692)
	cly (0.361925)
	ill (0.351185)
	ton (0.351)
	med (0.348756)
	cut (0.339847)
	nje (0.33184)
	cje (0.330469)
	csp (0.322373)
	cty (0.31224)
	tbr (0.308356)
	eli (0.303628)
	pty (0.285429)
	cga (0.279096)
	hlv (0.278513)
	ssp (0.271039)
	nmm (0.265604)
	sug (0.254582)
	mgp (0.230681)
	hea (0.204499)
	nbm (0.198649)
	jej (0.197844)
	nlu (0.191681)
	mgm (0.180343)
	sto (0.179824)
	duo (0.172801)
	mcp (0.170648)
	ctl (0.153069)
	cag (0.151194)
	isp (0.150376)
	spl (0.143184)
	nca (0.136874)
	kid (0.129735)
	ova (0.129132)
	cbr (0.127975)
	ese (0.126502)