Non-Coding RNA Search

Ss1.1-Mixn-0035b22.5

Sequence:


               
               TGCCGCGCCGCGGGAGGAGGGACCTGCCACCGAGGAGCTGCCGGGCTGCCCCAGGCGGGG
GTACAGTCGCAACCAAGGCGATGTCTTACTACCTCAACTCAGAAAACCACCTGGACCCAG
GGCCCATCTATGTGCGAGAAAATGGGCAACTGCACATGGTCAATCTGGCCTTGGATGGTG
TCAGGAGTAGCCTGCAGAAGCCAAGGCCTTTCAGACTGTTTCCCAAAGGCTTTTCTGTGG
AGCTTTGCATGAACCGGGAAGACGATACTGCACAGAAAGAGAAGACCGATCATTTCATCT
TCACTTACACCCGGGAGGGAAATCTTCGGTACTCTGCCAAATCCCTCTTCAGCCTCGTCC
TGGGCTTCATCTCTGACAATGTTGATCACATTGATTCCCTTATTGGCTTTCCTGAGCAGA
TTGCTGAAAAGCTGTTTTCTGCTGCTGAAGCCAGACAGAAGTTCACAGAGCCAGGTGCGG
GGCTGAGGGCTTTACAGAAATTCACTGAGGCCTATGGCAGTCTGGTGCTTTGCTCCTTGT
GTTTGCGAAAACAGATATCTGGTGATTTCAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGCGCCGCGGGAGGAGGGACCTGCCACCGAGGAGCTGCCGGGCTGCCCCAGGCGGGG
GTACAGTCGCAACCAAGGCGATGTCTTACTACCTCAACTCAGAAAACCACCTGGACCCAG
GGCCCATCTATGTGCGAGAAAATGGGCAACTGCACATGGTCAATCTGGCCTTGGATGGTG
TCAGGAGTAGCCTGCAGAAGCCAAGGCCTTTCAGACTGTTTCCCAAAGGCTTTTCTGTGG
AGCTTTGCATGAACCGGGAAGACGATACTGCACAGAAAGAGAAGACCGATCATTTCATCT
TCACTTACACCCGGGAGGGAAATCTTCGGTACTCTGCCAAATCCCTCTTCAGCCTCGTCC
TGGGCTTCATCTCTGACAATGTTGATCACATTGATTCCCTTATTGGCTTTCCTGAGCAGA
TTGCTGAAAAGCTGTTTTCTGCTGCTGAAGCCAGACAGAAGTTCACAGAGCCAGGTGCGG
GGCTGAGGGCTTTACAGAAATTCACTGAGGCCTATGGCAGTCTGGTGCTTTGCTCCTTGT
GTTTGCGAAAACAGATATCTGGTGATTTCAGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61825175|ref|XP_595810.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61825175|ref|XP_595810.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               62-220, - strand, RNAz p=0.857698
               

               
               341-460, - strand, RNAz p=0.818308

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-220, - strand, RNAz p=0.857698
               

               
               341-460, - strand, RNAz p=0.818308

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               62-550, gnl|bosTau2|chr3 (61931370-61931858)
               

               
               62-550, gnl|Hg17|chr1 (54129675-54130163)
               

               
               62-550, gnl|Mm7|chr4 (106624224-106623736)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-550, gnl|bosTau2|chr3 (61931370-61931858)
               

               
               62-550, gnl|Hg17|chr1 (54129675-54130163)
               

               
               62-550, gnl|Mm7|chr4 (106624224-106623736)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	62-220, - strand, RNAz p=0.857698
	341-460, - strand, RNAz p=0.818308

	62-550, gnl\|bosTau2\|chr3 (61931370-61931858)
	62-550, gnl\|Hg17\|chr1 (54129675-54130163)
	62-550, gnl\|Mm7\|chr4 (106624224-106623736)