Ss1.1-Mixn-0035c14.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCCACCCGATGGTGACTTCGAGCTCATGTCCTACCGACTCAGCACTCAGGTCAAGCCG CTGATCTGGATTGAATCTGTAATTGAGAAATTCTCCCACAGCCGCGTGGAGATCATGGTC AAGGCCAAGGGGCAGTTTAAGAAGCAGTCGGTGGCCAACAGTGTGGAGATATCTGTGCCT GTTCCCAGCGATGCTGACTCCCCACGCTTCAAAACCAGTGTGGGCAGTGCCAAGTACGTG CCAGAGAAGAATGTCGTTATCTGGAGCATCAAGTCATTCCCGGGAGGCAAGGAGTACCTG ATGCGTGCCCACTTTGGCCTCCCCAGCGTGGAGAAGGAGGAAGTGGAGGGCCGGCCCCCC ATCGGGGTCAAGTTTGAGATTCCCTACTTCACTGTCTCCGGGATCCAGGTCCGATATATG AAGATCATCGAGAAGAGTGGTTATCAGGCCCTGCCCTGGGTCCGCTATATTACCCAGAGT GGCGATTATCAACTTCGTACCAGTTAGAAGGGAGAAGAGGTGGGGGCTTGACCATGGGCC ACCCTCTCCCCAGGCCCCCGACTGAAGACTCTATAGAGAGAGGGAGGCACGATGGCGTGC ATGTCTGTGTGTGAGGGCAGCGTCTGAATTGGCAGTTTCCTGCTCTCAGCACCAGGATCG CTCCCAGCCTTTTCTTTTACACATAGGCTGGGCGGGGTGGTTTCCCTGTCTCCAGGCTCC TGCCCCTCCCCACCTCCAATTTTATATGAAGAAATAGAAGAGGGGCTTGAAGTCCCCCTC GTGAGTGCCTTCTTGCAGTGACCTGCCTTAGGAGGTGGGGGGAGGGTGCCCCTCCTCCAC AGTTGCTGAGCCCAGAGGCCCTGCTGACCCATTCTGAGTTTTAGGATGGCATTAAAAAAA TTAATCTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCCACCCGATGGTGACTTCGAGCTCATGTCCTACCGACTCAGCACTCAGGTCAAGCCG CTGATCTGGATTGAATCTGTAATTGAGAAATTCTCCCACAGCCGCGTGGAGATCATGGTC AAGGCCAAGGGGCAGTTTAAGAAGCAGTCGGTGGCCAACAGTGTGGAGATATCTGTGCCT GTTCCCAGCGATGCTGACTCCCCACGCTTCAAAACCAGTGTGGGCAGTGCCAAGTACGTG CCAGAGAAGAATGTCGTTATCTGGAGCATCAAGTCATTCCCGGGAGGCAAGGAGTACCTG ATGCGTGCCCACTTTGGCCTCCCCAGCGTGGAGAAGGAGGAAGTGGAGGGCCGGCCCCCC ATCGGGGTCAAGTTTGAGATTCCCTACTTCACTGTCTCCGGGATCCAGGTCCGATATATG AAGATCATCGAGAAGAGTGGTTATCAGGCCCTGCCCTGGGTCCGCTATATTACCCAGAGT GGCGATTATCAACTTCGTACCAGTTAGAAGGGAGAAGAGGTGGGGGCTTGACCATGGGCC ACCCTCTCCCCAGGCCCCCGACTGAAGACTCTATAGAGAGAGGGAGGCACGATGGCGTGC ATGTCTGTGTGTGAGGGCAGCGTCTGAATTGGCAGTTTCCTGCTCTCAGCACCAGGATCG CTCCCAGCCTTTTCTTTTACACATAGGCTGGGCGGGGTGGTTTCCCTGTCTCCAGGCTCC TGCCCCTCCCCACCTCCAATTTTATATGAAGAAATAGAAGAGGGGCTTGAAGTCCCCCTC GTGAGTGCCTTCTTGCAGTGACCTGCCTTAGGAGGTGGGGGGAGGGTGCCCCTCCTCCAC AGTTGCTGAGCCCAGAGGCCCTGCTGACCCATTCTGAGTTTTAGGATGGCATTAAAAAAA TTAATCTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 484-603, - strand, RNAz p=0.767739 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 484-603, - strand, RNAz p=0.767739 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 122-283, gnl|bosTau2|chr7 (10933862-10933701) | |
| 122-283, gnl|canFam2|chr20 (53607590-53607396) | |
| 122-283, gnl|danRer3|chrNA (141049606-141049429) | |
| 122-283, gnl|echTel1|scaffold_307788 (6300-6108) | |
| 122-283, gnl|fr1|chrUn (92016577-92016393) | |
| 122-283, gnl|galGal2|chr28 (3702862-3703047) | |
| 122-283, gnl|hg17|chr19 (10548865-10549060) | |
| 122-283, gnl|Hg17|chr19 (10549034-10548873) | |
| 122-283, gnl|mm7|chr9 (21175830-21176021) | |
| 122-283, gnl|Mm7|chr9 (21175997-21175836) | |
| 122-283, gnl|monDom2|scaffold_106 (2263594-2263777) | |
| 122-283, gnl|oryCun1|scaffold_208711 (7061-7220) | |
| 122-283, gnl|panTro1|chr20 (10943188-10943383) | |
| 122-283, gnl|rheMac2|chr19 (15761123-15760961) | |
| 122-283, gnl|rn3|chr16 (18012483-18012655) | |
| 122-283, gnl|tetNig1|chr18 (3685464-3685281) | |
| 122-283, gnl|xenTro1|scaffold_571 (716574-716758) | |
| 484-707, gnl|bosTau2|chr7 (10931462-10931243) | |
| 769-908, gnl|bosTau2|chr7 (10931253-10931117) | |
| 769-908, gnl|canFam2|chr20 (53609532-53609393) | |
| 769-908, gnl|canFam2|chr20 (53609529-53609400) | |
| 769-908, gnl|dasNov1|scaffold_17166 (40507-40646) | |
| 769-908, gnl|dasNov1|scaffold_17166 (40506-40639) | |
| 769-908, gnl|echTel1|scaffold_307788 (8130-7958) | |
| 769-908, gnl|echTel1|scaffold_307788 (8118-7965) | |
| 769-908, gnl|hg17|chr19 (10544343-10544485) | |
| 769-908, gnl|Hg17|chr19 (10544484-10544347) | |
| 769-908, gnl|hg17|chrX (64471755-64471909) | |
| 769-908, gnl|loxAfr1|scaffold_594 (83400-83547) | |
| 769-908, gnl|mm7|chr9 (21172017-21172151) | |
| 769-908, gnl|Mm7|chr9 (21172150-21172021) | |
| 769-908, gnl|oryCun1|scaffold_208711 (6549-6689) | |
| 769-908, gnl|oryCun1|scaffold_208711 (6549-6682) | |
| 769-908, gnl|panTro1|chr20 (10938661-10938803) | |
| 769-908, gnl|panTro1|chrX (66257175-66257329) | |
| 769-908, gnl|rheMac2|chr6 (175985737-175985599) | |
| 769-908, gnl|rn3|chr10 (9256500-9256380) | |
| 769-908, gnl|rn3|chr10 (9256513-9256370) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-283, gnl|bosTau2|chr7 (10933862-10933701) | |
| 122-283, gnl|canFam2|chr20 (53607590-53607396) | |
| 122-283, gnl|danRer3|chrNA (141049606-141049429) | |
| 122-283, gnl|echTel1|scaffold_307788 (6300-6108) | |
| 122-283, gnl|fr1|chrUn (92016577-92016393) | |
| 122-283, gnl|galGal2|chr28 (3702862-3703047) | |
| 122-283, gnl|hg17|chr19 (10548865-10549060) | |
| 122-283, gnl|Hg17|chr19 (10549034-10548873) | |
| 122-283, gnl|mm7|chr9 (21175830-21176021) | |
| 122-283, gnl|Mm7|chr9 (21175997-21175836) | |
| 122-283, gnl|monDom2|scaffold_106 (2263594-2263777) | |
| 122-283, gnl|oryCun1|scaffold_208711 (7061-7220) | |
| 122-283, gnl|panTro1|chr20 (10943188-10943383) | |
| 122-283, gnl|rheMac2|chr19 (15761123-15760961) | |
| 122-283, gnl|rn3|chr16 (18012483-18012655) | |
| 122-283, gnl|tetNig1|chr18 (3685464-3685281) | |
| 122-283, gnl|xenTro1|scaffold_571 (716574-716758) | |
| 484-707, gnl|bosTau2|chr7 (10931462-10931243) | |
| 769-908, gnl|bosTau2|chr7 (10931253-10931117) | |
| 769-908, gnl|canFam2|chr20 (53609532-53609393) | |
| 769-908, gnl|canFam2|chr20 (53609529-53609400) | |
| 769-908, gnl|dasNov1|scaffold_17166 (40507-40646) | |
| 769-908, gnl|dasNov1|scaffold_17166 (40506-40639) | |
| 769-908, gnl|echTel1|scaffold_307788 (8130-7958) | |
| 769-908, gnl|echTel1|scaffold_307788 (8118-7965) | |
| 769-908, gnl|hg17|chr19 (10544343-10544485) | |
| 769-908, gnl|Hg17|chr19 (10544484-10544347) | |
| 769-908, gnl|hg17|chrX (64471755-64471909) | |
| 769-908, gnl|loxAfr1|scaffold_594 (83400-83547) | |
| 769-908, gnl|mm7|chr9 (21172017-21172151) | |
| 769-908, gnl|Mm7|chr9 (21172150-21172021) | |
| 769-908, gnl|oryCun1|scaffold_208711 (6549-6689) | |
| 769-908, gnl|oryCun1|scaffold_208711 (6549-6682) | |
| 769-908, gnl|panTro1|chr20 (10938661-10938803) | |
| 769-908, gnl|panTro1|chrX (66257175-66257329) | |
| 769-908, gnl|rheMac2|chr6 (175985737-175985599) | |
| 769-908, gnl|rn3|chr10 (9256500-9256380) | |
| 769-908, gnl|rn3|chr10 (9256513-9256370) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| pla (0.133672) | |
| ute (0.132784) |