Non-Coding RNA Search

Ss1.1-Mixn-0035e19.5

Sequence:


               
               TGTCATCCTTGCCTGGGAGAGACCTGGACGAGGAGGGGGGCCTTAGCACCTCTTTCAGCA
GGAGGGATGGTGCCTGAAGAGCTCCGATGTGAGGGGAGTGCCAAGCGCTTGTGGCCCATC
AGGTGAGGAGACAACTCAGCATCCCCGGAAACACTTTCTGTGGCAGAAAAAAGGCAGTCT
TCTTACCCCAGCGCACGTGCCTGGGCCCAGGGCATGGTCCAGTGAAAATGGAGATTCTGC
CTGGAAGGCAGTGATGAGGGGCTGGAGAGGCAGGGGGAAGAGGGTCCATCATCCCTCCCC
TCCTGAGGAAACTACAAATGGGAGTCCAGCATCTCGACCAGCAGTTGGGAGGGTGGCGAA
GGAGGACAAGCCCCTTCCCAGGCTATCAAAAGTTCCTAAGAGCTTCCAGAACTCTGACCC
GGGGGCAGGAAGTCAGGCCAGGTGGAGCCCCAGAGGCCTACAGAGTCTGGCCCAAGTGTT
TCTCTGGGAGGCTCTGCCCTCCTCCCCCATCAGTGCCTGAGCCTTCAGACAGCATCCTGC
CCCACAGGCCTGCCTTCTCGGGGTCCGCTGGGGGCCTGAGGGAGGCCATGGGGTGAGACC
CATGAGCGGGACATGCTTTTCCCAACACCCAGCTCCCCCACCTGGCGGCTCTGCCCTGTC
CTGTGACCGTGTGTAGTGTCACACAGCTTATGGCATCTCATTGAGGAAAAAGAATATTGT
ACAATAAAACCAAGCCTCTGGAATAAAAAAAAAAAATCTGCTTTGCTCCTCTCTCCCCAG
GCCCGCCCCCACCCCCTAGCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCATCCTTGCCTGGGAGAGACCTGGACGAGGAGGGGGGCCTTAGCACCTCTTTCAGCA
GGAGGGATGGTGCCTGAAGAGCTCCGATGTGAGGGGAGTGCCAAGCGCTTGTGGCCCATC
AGGTGAGGAGACAACTCAGCATCCCCGGAAACACTTTCTGTGGCAGAAAAAAGGCAGTCT
TCTTACCCCAGCGCACGTGCCTGGGCCCAGGGCATGGTCCAGTGAAAATGGAGATTCTGC
CTGGAAGGCAGTGATGAGGGGCTGGAGAGGCAGGGGGAAGAGGGTCCATCATCCCTCCCC
TCCTGAGGAAACTACAAATGGGAGTCCAGCATCTCGACCAGCAGTTGGGAGGGTGGCGAA
GGAGGACAAGCCCCTTCCCAGGCTATCAAAAGTTCCTAAGAGCTTCCAGAACTCTGACCC
GGGGGCAGGAAGTCAGGCCAGGTGGAGCCCCAGAGGCCTACAGAGTCTGGCCCAAGTGTT
TCTCTGGGAGGCTCTGCCCTCCTCCCCCATCAGTGCCTGAGCCTTCAGACAGCATCCTGC
CCCACAGGCCTGCCTTCTCGGGGTCCGCTGGGGGCCTGAGGGAGGCCATGGGGTGAGACC
CATGAGCGGGACATGCTTTTCCCAACACCCAGCTCCCCCACCTGGCGGCTCTGCCCTGTC
CTGTGACCGTGTGTAGTGTCACACAGCTTATGGCATCTCATTGAGGAAAAAGAATATTGT
ACAATAAAACCAAGCCTCTGGAATAAAAAAAAAAAATCTGCTTTGCTCCTCTCTCCCCAG
GCCCGCCCCCACCCCCTAGCCGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               273-377, - strand, RNAz p=0.948871
               

               
               492-615, - strand, RNAz p=0.912069

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-377, - strand, RNAz p=0.948871
               

               
               492-615, - strand, RNAz p=0.912069

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               197-801, gnl|bosTau2|chr15 (14486137-14485496)
               

               
               197-801, gnl|Hg17|chr11 (118794896-118794039)
               

               
               197-801, gnl|Mm7|chr9 (43982208-43983039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-801, gnl|bosTau2|chr15 (14486137-14485496)
               

               
               197-801, gnl|Hg17|chr11 (118794896-118794039)
               

               
               197-801, gnl|Mm7|chr9 (43982208-43983039)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fcc (1.38449)
               

               
               fhi (1.01747)
               

               
               jca (0.797721)
               

               
               ute (0.663922)
               

               
               fbs (0.526039)
               

               
               cly (0.482567)
               

               
               nlu (0.383362)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.38449)
               

               
               fhi (1.01747)
               

               
               jca (0.797721)
               

               
               ute (0.663922)
               

               
               fbs (0.526039)
               

               
               cly (0.482567)
               

               
               nlu (0.383362)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)

	273-377, - strand, RNAz p=0.948871
	492-615, - strand, RNAz p=0.912069

	197-801, gnl\|bosTau2\|chr15 (14486137-14485496)
	197-801, gnl\|Hg17\|chr11 (118794896-118794039)
	197-801, gnl\|Mm7\|chr9 (43982208-43983039)

	fcc (1.38449)
	fhi (1.01747)
	jca (0.797721)
	ute (0.663922)
	fbs (0.526039)
	cly (0.482567)
	nlu (0.383362)
	hyp (0.285673)
	lnt (0.284616)
	fce (0.271592)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	ebs (0.236602)
	mcp (0.170648)
	csp (0.161186)
	hlv (0.139256)