Ss1.1-Mixn-0035g01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTTGTCCCCCTTCCAAGATGGCTGCGTCCATGGTGCGGCGTTTGTGGCCTCTGGTGG CTAGTCGGGGCCTGCGGCTCCGGGGAGGCTATGCCTGCAACCAGAGCCCAAGGAGAAGCT TCGCTACGGAGAGGCGAGACAGGAACCTCCTGTACGAGCACGCACGTGAAGGCTACAGCG CGCTCCCTCAGCTGGACATGGAGCCGCTGTGCGCATACCCGGAAGAGGCGGCGCGCACCT TGGATCTCCGCAAGGGGGAGCTGCGATCTGACGACCTGCCGGCGATCATCTCAACGTGGC AGGAGCTGAGGCAGCTGCAGGAGCAGATCCAGAGCCTGGAAGAGGAGAAGAGGGCTGTGG CCGAGGCAGTGCGGGCCCTGGTGGTCACCCAGGACAACGATCAGGTACAGCAGGACCCCC GGTATCAGAGTCTGCGGGCACGTGGCCGGGAGATCCGGAAGCAGCTCGTGCTCCTATACC CCAAGGAGGCCCAGCTCGAGGAGTGGTTCTACCTGCGGGCACTGAGGCTGCCCAACCAGA CCCACCCAGACGTGCCTGTCGGGGACGAGAGCCAGGCCCGAGTGCTCCACGTGGTCGGAG ACAAGCCAGCTTTCTCCTTCCAGCCCCGCGGCCACCTGCAATTAGCAGAGAACCTTGACA TCATCCGTCAGAAGCGCCTGTCCCACGTGTCTGGCCACCGCTCCTATTACCTGCGCGGGG CCGGGGCGCTCCTACAGCACGGCCTGGTCAACTTCACACTCCAGAAGCTCATCCACCGGG GCTTCACCCCCATGACGGTGCCAGACCTCCTCCGAGGAGCCGTGTTTGAAGGCTGTGGGA TGACACCAAATGCCAACCCCTCCCCTTCATGGACCACTCGGTGGCCTTCAGGGACCTGCC AATCAGGTGATGCCCAGGTCCTTTAGCCCCTGTCCCCCCCGTGACATCCCCTCTCCCAAC ACCACCTACTCCATTCCTCCAGGATGGTTTGTTCCAGTACCTGCTACCGGGCGGAAACAG ACACAGGGAAAGAGCCGCGGGGGCTCTATCGAGTGCACCACTTCACCAAGGTGGAGATGT TTGGGGTGACAGGCCCTGGGCTGGAGCAGAGCTCGCAGCTGCTGGAGGAGTTCCTGTCCC TTCAGATGGAGATCTTGACAGAGCTGGGCTTGCACTTCCGGGTCCTGGACATGCCCACGC AGGAGCTGGGCCTGTCCGCCTACCGCAAGTTCGACATTGAGGCCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTTGTCCCCCTTCCAAGATGGCTGCGTCCATGGTGCGGCGTTTGTGGCCTCTGGTGG CTAGTCGGGGCCTGCGGCTCCGGGGAGGCTATGCCTGCAACCAGAGCCCAAGGAGAAGCT TCGCTACGGAGAGGCGAGACAGGAACCTCCTGTACGAGCACGCACGTGAAGGCTACAGCG CGCTCCCTCAGCTGGACATGGAGCCGCTGTGCGCATACCCGGAAGAGGCGGCGCGCACCT TGGATCTCCGCAAGGGGGAGCTGCGATCTGACGACCTGCCGGCGATCATCTCAACGTGGC AGGAGCTGAGGCAGCTGCAGGAGCAGATCCAGAGCCTGGAAGAGGAGAAGAGGGCTGTGG CCGAGGCAGTGCGGGCCCTGGTGGTCACCCAGGACAACGATCAGGTACAGCAGGACCCCC GGTATCAGAGTCTGCGGGCACGTGGCCGGGAGATCCGGAAGCAGCTCGTGCTCCTATACC CCAAGGAGGCCCAGCTCGAGGAGTGGTTCTACCTGCGGGCACTGAGGCTGCCCAACCAGA CCCACCCAGACGTGCCTGTCGGGGACGAGAGCCAGGCCCGAGTGCTCCACGTGGTCGGAG ACAAGCCAGCTTTCTCCTTCCAGCCCCGCGGCCACCTGCAATTAGCAGAGAACCTTGACA TCATCCGTCAGAAGCGCCTGTCCCACGTGTCTGGCCACCGCTCCTATTACCTGCGCGGGG CCGGGGCGCTCCTACAGCACGGCCTGGTCAACTTCACACTCCAGAAGCTCATCCACCGGG GCTTCACCCCCATGACGGTGCCAGACCTCCTCCGAGGAGCCGTGTTTGAAGGCTGTGGGA TGACACCAAATGCCAACCCCTCCCCTTCATGGACCACTCGGTGGCCTTCAGGGACCTGCC AATCAGGTGATGCCCAGGTCCTTTAGCCCCTGTCCCCCCCGTGACATCCCCTCTCCCAAC ACCACCTACTCCATTCCTCCAGGATGGTTTGTTCCAGTACCTGCTACCGGGCGGAAACAG ACACAGGGAAAGAGCCGCGGGGGCTCTATCGAGTGCACCACTTCACCAAGGTGGAGATGT TTGGGGTGACAGGCCCTGGGCTGGAGCAGAGCTCGCAGCTGCTGGAGGAGTTCCTGTCCC TTCAGATGGAGATCTTGACAGAGCTGGGCTTGCACTTCCGGGTCCTGGACATGCCCACGC AGGAGCTGGGCCTGTCCGCCTACCGCAAGTTCGACATTGAGGCCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 437-554, - strand, RNAz p=0.518218 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 437-554, - strand, RNAz p=0.518218 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 5-287, gnl|bosTau2|chr18 (42111595-42111313) | |
| 5-287, gnl|canFam2|chr1 (117100769-117100462) | |
| 5-287, gnl|dasNov1|scaffold_107018 (5716-5409) | |
| 5-287, gnl|echTel1|scaffold_278158 (62603-62296) | |
| 5-287, gnl|fr1|chrUn (197447598-197447884) | |
| 5-287, gnl|hg17|chr19 (44112935-44113242) | |
| 5-287, gnl|Hg17|chr19 (44113232-44112950) | |
| 5-287, gnl|loxAfr1|scaffold_170061 (688-384) | |
| 5-287, gnl|mm7|chr7 (25676537-25676230) | |
| 5-287, gnl|Mm7|chr7 (25676238-25676520) | |
| 5-287, gnl|monDom2|scaffold_139 (862246-862568) | |
| 5-287, gnl|oryCun1|scaffold_181159 (7715-7408) | |
| 5-287, gnl|panTro1|chr20 (41064905-41065212) | |
| 5-287, gnl|rheMac2|chr19 (45275009-45275316) | |
| 5-287, gnl|rn3|chr1 (83926664-83926357) | |
| 411-554, gnl|bosTau2|chr18 (42107599-42107456) | |
| 411-554, gnl|canFam2|chr1 (117105805-117105693) | |
| 411-554, gnl|danRer3|chr20 (7749308-7749420) | |
| 411-554, gnl|dasNov1|scaffold_196659 (3558-3670) | |
| 411-554, gnl|echTel1|scaffold_307771 (4619-4731) | |
| 411-554, gnl|fr1|chrUn (197446839-197446951) | |
| 411-554, gnl|hg17|chr19 (44104006-44104118) | |
| 411-554, gnl|Hg17|chr19 (44104150-44104007) | |
| 411-554, gnl|mm7|chr7 (25681122-25681010) | |
| 411-554, gnl|Mm7|chr7 (25680976-25681119) | |
| 411-554, gnl|monDom2|scaffold_139 (853991-854103) | |
| 411-554, gnl|oryCun1|scaffold_189063 (542-430) | |
| 411-554, gnl|rheMac2|chr19 (45264968-45265080) | |
| 411-554, gnl|rn3|chr1 (83931617-83931505) | |
| 411-554, gnl|tetNig1|chr16 (7823747-7823859) | |
| 411-554, gnl|xenTro1|scaffold_1280 (172592-172497) | |
| 674-780, gnl|bosTau2|chr18 (42106740-42106634) | |
| 674-780, gnl|Hg17|chr19 (44102347-44102241) | |
| 674-780, gnl|Mm7|chr7 (25682090-25682196) | |
| 865-1072, gnl|bosTau2|chr18 (42105012-42104792) | |
| 865-1072, gnl|Hg17|chr19 (44100615-44100399) | |
| 865-1072, gnl|Mm7|chr7 (25684143-25684358) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-287, gnl|bosTau2|chr18 (42111595-42111313) | |
| 5-287, gnl|canFam2|chr1 (117100769-117100462) | |
| 5-287, gnl|dasNov1|scaffold_107018 (5716-5409) | |
| 5-287, gnl|echTel1|scaffold_278158 (62603-62296) | |
| 5-287, gnl|fr1|chrUn (197447598-197447884) | |
| 5-287, gnl|hg17|chr19 (44112935-44113242) | |
| 5-287, gnl|Hg17|chr19 (44113232-44112950) | |
| 5-287, gnl|loxAfr1|scaffold_170061 (688-384) | |
| 5-287, gnl|mm7|chr7 (25676537-25676230) | |
| 5-287, gnl|Mm7|chr7 (25676238-25676520) | |
| 5-287, gnl|monDom2|scaffold_139 (862246-862568) | |
| 5-287, gnl|oryCun1|scaffold_181159 (7715-7408) | |
| 5-287, gnl|panTro1|chr20 (41064905-41065212) | |
| 5-287, gnl|rheMac2|chr19 (45275009-45275316) | |
| 5-287, gnl|rn3|chr1 (83926664-83926357) | |
| 411-554, gnl|bosTau2|chr18 (42107599-42107456) | |
| 411-554, gnl|canFam2|chr1 (117105805-117105693) | |
| 411-554, gnl|danRer3|chr20 (7749308-7749420) | |
| 411-554, gnl|dasNov1|scaffold_196659 (3558-3670) | |
| 411-554, gnl|echTel1|scaffold_307771 (4619-4731) | |
| 411-554, gnl|fr1|chrUn (197446839-197446951) | |
| 411-554, gnl|hg17|chr19 (44104006-44104118) | |
| 411-554, gnl|Hg17|chr19 (44104150-44104007) | |
| 411-554, gnl|mm7|chr7 (25681122-25681010) | |
| 411-554, gnl|Mm7|chr7 (25680976-25681119) | |
| 411-554, gnl|monDom2|scaffold_139 (853991-854103) | |
| 411-554, gnl|oryCun1|scaffold_189063 (542-430) | |
| 411-554, gnl|rheMac2|chr19 (45264968-45265080) | |
| 411-554, gnl|rn3|chr1 (83931617-83931505) | |
| 411-554, gnl|tetNig1|chr16 (7823747-7823859) | |
| 411-554, gnl|xenTro1|scaffold_1280 (172592-172497) | |
| 674-780, gnl|bosTau2|chr18 (42106740-42106634) | |
| 674-780, gnl|Hg17|chr19 (44102347-44102241) | |
| 674-780, gnl|Mm7|chr7 (25682090-25682196) | |
| 865-1072, gnl|bosTau2|chr18 (42105012-42104792) | |
| 865-1072, gnl|Hg17|chr19 (44100615-44100399) | |
| 865-1072, gnl|Mm7|chr7 (25684143-25684358) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) | |
| jej (0.0989218) |