Ss1.1-Mixn-0035g07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCGGATCCCGGAGCTGCCAACACCACCGCAGCGCTACGCACAGGTACCCCTGGGATGG CGTGAGCGCCCGCCCCCGCCCCCGCGATGGACCCTTCTGTGACGCTGTGGCAGTTTCTGC TGCAGCTGCTGAGAGAGCAAGGCAACGGCCACATCATCTCCTGGACCTCACGGGATGGCG GTGAGTTCAAGCTGGTGGATGCCGAGGAGGTGGCCCGGCTGTGGGGGCTGCGCAAGAATA AGACCAACATGAATTATGACAAGCTCAGCCGGGCCTTGCGGTACTACTATGACAAGAACA TCATCCGCAAAGTGAGCGGCCAGAAGTTTGTCTACAAGTTTGTGTCCTACCCCGAGGTCG CAGGGTGCTCCGCGGAGGACTGCCCAGCCCAGCCCGAGGTGGCTGTCACCTCCGCGGTGG CAAGTGCAGGCCCCGCCGCTGTCCACGCCGTTCCCGGGGACACTGCCTCCGGAAAGCCAG GCACACCCAAGGGTGCCGGAATGGCAGGCCCGGGCGGCTTGGCACGCAGCAGCCGGAACG ACTACATGCGCTCAGGCCTCTACTCCACCTTCACCATCCAGTCCCTACAGCCGCAGCCAC AGCCGCCAGCCTCTCACCCGCGGCCTTCCACCGTGCTCCCCAACGCCACCCCAGCGGGAG CAGCAGTGCCCCCCTCAGGGAGTAGGAGCACCAGTCCAAGCCCCTTGGAGGCCTGTCTGG AGGCTGAGGAGGCCAGCCTGCCTCTGCAGGTCATCCTGACCCCGCCTGAGGCCCCAAACC TTAAATCCGAAGAGCCAAATATGGAGCCTGGGTTGGGCCGGCCACTGCCCCCGGAAGTGA AAGTGGAAGAGCCCAAGGAAGAGTTAGAAGCTGCAGCCAGTGGGGAGGCAGGATTTGTGC TGGAAGCCGTCAAGGCCGAGCCCTTTGAGCCCAAGGCAGAGCCAGAAATCCCGCCCGCAG AGGGCGTGCCAGCCCGGCTGCCTGCGGTCCTTATGGAAACCGCAGCGCAGGTGGGCGGCC TTGCGGCTTCCACCACTTCCAGCACAGAGATCGCCCAGCCTCAGAAGGGCCGGAAGCCCC GGGACCTGGAGCTTCCACTCAGCCCGAGCCTGCTGGGTGGGCCGGGACCCGAACGGACTC CAGGATCGGGAACCGGCTCCGGGCTGCAGGCGCCAGGCCCGGCGCTGACGCCGTCCCTGC TACCTACGCACACATTGACCCCGGTGCTGCTGACGCCCAGCTCGCTGCCCCCCAGCATTC ACTTCTGGAGCACCCTGAGTCCCATTGCACCCCGTAGCCCGGCCAAGCTCTCCTTCCAGT TTCCGTCCAGTGGCAGCGCCCAGGTGCACATCCCTTCCATCAGCGTGGATGGCCTCTCAA CCCCCGTGGTGCTCTCCCCAGGGCCCCAGAAGCCATGACTGTCACCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCGGATCCCGGAGCTGCCAACACCACCGCAGCGCTACGCACAGGTACCCCTGGGATGG CGTGAGCGCCCGCCCCCGCCCCCGCGATGGACCCTTCTGTGACGCTGTGGCAGTTTCTGC TGCAGCTGCTGAGAGAGCAAGGCAACGGCCACATCATCTCCTGGACCTCACGGGATGGCG GTGAGTTCAAGCTGGTGGATGCCGAGGAGGTGGCCCGGCTGTGGGGGCTGCGCAAGAATA AGACCAACATGAATTATGACAAGCTCAGCCGGGCCTTGCGGTACTACTATGACAAGAACA TCATCCGCAAAGTGAGCGGCCAGAAGTTTGTCTACAAGTTTGTGTCCTACCCCGAGGTCG CAGGGTGCTCCGCGGAGGACTGCCCAGCCCAGCCCGAGGTGGCTGTCACCTCCGCGGTGG CAAGTGCAGGCCCCGCCGCTGTCCACGCCGTTCCCGGGGACACTGCCTCCGGAAAGCCAG GCACACCCAAGGGTGCCGGAATGGCAGGCCCGGGCGGCTTGGCACGCAGCAGCCGGAACG ACTACATGCGCTCAGGCCTCTACTCCACCTTCACCATCCAGTCCCTACAGCCGCAGCCAC AGCCGCCAGCCTCTCACCCGCGGCCTTCCACCGTGCTCCCCAACGCCACCCCAGCGGGAG CAGCAGTGCCCCCCTCAGGGAGTAGGAGCACCAGTCCAAGCCCCTTGGAGGCCTGTCTGG AGGCTGAGGAGGCCAGCCTGCCTCTGCAGGTCATCCTGACCCCGCCTGAGGCCCCAAACC TTAAATCCGAAGAGCCAAATATGGAGCCTGGGTTGGGCCGGCCACTGCCCCCGGAAGTGA AAGTGGAAGAGCCCAAGGAAGAGTTAGAAGCTGCAGCCAGTGGGGAGGCAGGATTTGTGC TGGAAGCCGTCAAGGCCGAGCCCTTTGAGCCCAAGGCAGAGCCAGAAATCCCGCCCGCAG AGGGCGTGCCAGCCCGGCTGCCTGCGGTCCTTATGGAAACCGCAGCGCAGGTGGGCGGCC TTGCGGCTTCCACCACTTCCAGCACAGAGATCGCCCAGCCTCAGAAGGGCCGGAAGCCCC GGGACCTGGAGCTTCCACTCAGCCCGAGCCTGCTGGGTGGGCCGGGACCCGAACGGACTC CAGGATCGGGAACCGGCTCCGGGCTGCAGGCGCCAGGCCCGGCGCTGACGCCGTCCCTGC TACCTACGCACACATTGACCCCGGTGCTGCTGACGCCCAGCTCGCTGCCCCCCAGCATTC ACTTCTGGAGCACCCTGAGTCCCATTGCACCCCGTAGCCCGGCCAAGCTCTCCTTCCAGT TTCCGTCCAGTGGCAGCGCCCAGGTGCACATCCCTTCCATCAGCGTGGATGGCCTCTCAA CCCCCGTGGTGCTCTCCCCAGGGCCCCAGAAGCCATGACTGTCACCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 741-858, - strand, RNAz p=0.516206 | |
| 900-1428, - strand, RNAz p=0.972536 | |
| 939-1107, - strand, RNAz p=0.978349 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 741-858, - strand, RNAz p=0.516206 | |
| 900-1428, - strand, RNAz p=0.972536 | |
| 939-1107, - strand, RNAz p=0.978349 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC056150, - |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 43-296, gnl|bosTau2|chrX (25654787-25654541) | |
| 43-296, gnl|Hg17|chrX (47257131-47256885) | |
| 43-296, gnl|Mm7|chrX (19374950-19374704) | |
| 741-1217, gnl|bosTau2|chrX (25651090-25650613) | |
| 741-1217, gnl|canFam2|chrX (41205589-41206034) | |
| 741-1217, gnl|dasNov1|scaffold_18717 (1702-1258) | |
| 741-1217, gnl|echTel1|scaffold_290089 (36939-37351) | |
| 741-1217, gnl|hg17|chrX (47253405-47253835) | |
| 741-1217, gnl|Hg17|chrX (47253845-47253404) | |
| 741-1217, gnl|loxAfr1|scaffold_135680 (1097-1510) | |
| 741-1217, gnl|mm7|chrX (19369383-19369813) | |
| 741-1217, gnl|Mm7|chrX (19369823-19369382) | |
| 741-1217, gnl|oryCun1|scaffold_142841 (1713-2143) | |
| 741-1217, gnl|panTro1|chr15 (105913733-105914158) | |
| 741-1217, gnl|rheMac2|chrX (45462852-45463282) | |
| 741-1217, gnl|rn3|chrX (12604214-12604644) | |
| 1317-1428, gnl|bosTau2|chrX (25649744-25649633) | |
| 1317-1428, gnl|canFam2|chrX (41204631-41204758) | |
| 1317-1428, gnl|dasNov1|scaffold_18717 (2784-2657) | |
| 1317-1428, gnl|fr1|chrUn (38154124-38154000) | |
| 1317-1428, gnl|hg17|chr14 (105083958-105084084) | |
| 1317-1428, gnl|Hg17|chrX (47252583-47252472) | |
| 1317-1428, gnl|loxAfr1|scaffold_135680 (133-257) | |
| 1317-1428, gnl|mm7|chrX (19368577-19368699) | |
| 1317-1428, gnl|Mm7|chrX (19368701-19368590) | |
| 1317-1428, gnl|monDom2|scaffold_134 (568144-568081) | |
| 1317-1428, gnl|oryCun1|scaffold_142841 (734-927) | |
| 1317-1428, gnl|panTro1|chr15 (105913505-105913634) | |
| 1317-1428, gnl|rheMac2|chr7 (168912404-168912535) | |
| 1317-1428, gnl|rn3|chrX (12603397-12603518) | |
| 1317-1428, gnl|tetNig1|chrUn_random (51687304-51687187) | |
| 1317-1428, gnl|xenTro1|scaffold_948 (283611-283740) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-296, gnl|bosTau2|chrX (25654787-25654541) | |
| 43-296, gnl|Hg17|chrX (47257131-47256885) | |
| 43-296, gnl|Mm7|chrX (19374950-19374704) | |
| 741-1217, gnl|bosTau2|chrX (25651090-25650613) | |
| 741-1217, gnl|canFam2|chrX (41205589-41206034) | |
| 741-1217, gnl|dasNov1|scaffold_18717 (1702-1258) | |
| 741-1217, gnl|echTel1|scaffold_290089 (36939-37351) | |
| 741-1217, gnl|hg17|chrX (47253405-47253835) | |
| 741-1217, gnl|Hg17|chrX (47253845-47253404) | |
| 741-1217, gnl|loxAfr1|scaffold_135680 (1097-1510) | |
| 741-1217, gnl|mm7|chrX (19369383-19369813) | |
| 741-1217, gnl|Mm7|chrX (19369823-19369382) | |
| 741-1217, gnl|oryCun1|scaffold_142841 (1713-2143) | |
| 741-1217, gnl|panTro1|chr15 (105913733-105914158) | |
| 741-1217, gnl|rheMac2|chrX (45462852-45463282) | |
| 741-1217, gnl|rn3|chrX (12604214-12604644) | |
| 1317-1428, gnl|bosTau2|chrX (25649744-25649633) | |
| 1317-1428, gnl|canFam2|chrX (41204631-41204758) | |
| 1317-1428, gnl|dasNov1|scaffold_18717 (2784-2657) | |
| 1317-1428, gnl|fr1|chrUn (38154124-38154000) | |
| 1317-1428, gnl|hg17|chr14 (105083958-105084084) | |
| 1317-1428, gnl|Hg17|chrX (47252583-47252472) | |
| 1317-1428, gnl|loxAfr1|scaffold_135680 (133-257) | |
| 1317-1428, gnl|mm7|chrX (19368577-19368699) | |
| 1317-1428, gnl|Mm7|chrX (19368701-19368590) | |
| 1317-1428, gnl|monDom2|scaffold_134 (568144-568081) | |
| 1317-1428, gnl|oryCun1|scaffold_142841 (734-927) | |
| 1317-1428, gnl|panTro1|chr15 (105913505-105913634) | |
| 1317-1428, gnl|rheMac2|chr7 (168912404-168912535) | |
| 1317-1428, gnl|rn3|chrX (12603397-12603518) | |
| 1317-1428, gnl|tetNig1|chrUn_random (51687304-51687187) | |
| 1317-1428, gnl|xenTro1|scaffold_948 (283611-283740) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| hea (0.204499) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jej (0.0989218) |