Ss1.1-Mixn-0035i23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGCAGATAAACCCCCTGCCCTACAGCCGCGTGCTGAACACCTACCGCCTTCCCAGCTGC GGCTGCCACCCCCAGCACTCCTGGGGCTCCCTGTGCCGCAAGCTGTTCTTCGGGGAGCTC ATCTACCCTTGGAGGCAGAGAGGGGTCCGTCCTGCCATGGGGCGGAGGGACCCTTCTCAG GGCGGGCTCGGCAGTCCTTGAGACTCGGGTGTTTTCTGCAGGACGCTCTTGGATCCCCAG TGCCTTCCAGCAGCCTCAGTGGAGCAACACCCAGCCAGTCTGGGGGATCCAGGCCACGGC TGACCCCCAGCCCAAACCAGCAGCCCCAGGGAGCTGGGCAGCCCTGCCCTTGGGCCCTGG TTTGCACTGGGCTTGCTTGATGCTCCTGCAGACGGTACTTTGTAGGTGGAGCTGCCCGCA GCCTTTGGGTGTCCCTGTGTAAAGCCAGGCCACCTGGGGTACCTGGAACAGGCAGCAGAC GGCCCTCCCTGGCCCCCGTTCTTGCTCTGTACCCCTGCAGGGACAGGTCCCTTGGCCCTA TCTTCCATCTCACTCACTGGCTTCTCGCAGAGGCAGGCAGCTCCTGGGCAGACGCTTCTG CAGCCCCCAGGGAGGGCGTCCTAGCACTTAGGCTGCAGCTGCCTGCTGGCCGCAGGCGGA AGCTGAGTGTGAGTGGGGGCCCTGGAATCCCTGGGGAGGAAGCCTGAAGGTGCGGTTGTG TCACGTAGGATGTGTCATCTTGGTGTTGGAGGCGTCCCTCAGCACTGTCCACTTCTGCCG CCCCCGCTTCTTAGCTGTGGGCCACAGTGGGGGGCATCCTGGGGGCGTCCCCCAGCCCAG TGGCGGGCGGGCGGGTTTTGGCTCTGTCTTTTTCTGATGGGACAATAAAGCCTCCCACTT GTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGCAGATAAACCCCCTGCCCTACAGCCGCGTGCTGAACACCTACCGCCTTCCCAGCTGC GGCTGCCACCCCCAGCACTCCTGGGGCTCCCTGTGCCGCAAGCTGTTCTTCGGGGAGCTC ATCTACCCTTGGAGGCAGAGAGGGGTCCGTCCTGCCATGGGGCGGAGGGACCCTTCTCAG GGCGGGCTCGGCAGTCCTTGAGACTCGGGTGTTTTCTGCAGGACGCTCTTGGATCCCCAG TGCCTTCCAGCAGCCTCAGTGGAGCAACACCCAGCCAGTCTGGGGGATCCAGGCCACGGC TGACCCCCAGCCCAAACCAGCAGCCCCAGGGAGCTGGGCAGCCCTGCCCTTGGGCCCTGG TTTGCACTGGGCTTGCTTGATGCTCCTGCAGACGGTACTTTGTAGGTGGAGCTGCCCGCA GCCTTTGGGTGTCCCTGTGTAAAGCCAGGCCACCTGGGGTACCTGGAACAGGCAGCAGAC GGCCCTCCCTGGCCCCCGTTCTTGCTCTGTACCCCTGCAGGGACAGGTCCCTTGGCCCTA TCTTCCATCTCACTCACTGGCTTCTCGCAGAGGCAGGCAGCTCCTGGGCAGACGCTTCTG CAGCCCCCAGGGAGGGCGTCCTAGCACTTAGGCTGCAGCTGCCTGCTGGCCGCAGGCGGA AGCTGAGTGTGAGTGGGGGCCCTGGAATCCCTGGGGAGGAAGCCTGAAGGTGCGGTTGTG TCACGTAGGATGTGTCATCTTGGTGTTGGAGGCGTCCCTCAGCACTGTCCACTTCTGCCG CCCCCGCTTCTTAGCTGTGGGCCACAGTGGGGGGCATCCTGGGGGCGTCCCCCAGCCCAG TGGCGGGCGGGCGGGTTTTGGCTCTGTCTTTTTCTGATGGGACAATAAAGCCTCCCACTT GTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 267-383, - strand, RNAz p=0.991028 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-383, - strand, RNAz p=0.991028 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 4-145, gnl|bosTau2|chr25 (1303402-1303261) | |
| 4-145, gnl|canFam2|chr6 (43013024-43013126) | |
| 4-145, gnl|canFam2|chr6 (43013175-43012987) | |
| 4-145, gnl|danRer3|chr3 (19091927-19092035) | |
| 4-145, gnl|danRer3|chr3 (19171691-19171532) | |
| 4-145, gnl|echTel1|scaffold_262554 (13183-13291) | |
| 4-145, gnl|echTel1|scaffold_262554 (13340-13157) | |
| 4-145, gnl|fr1|chrUn (146974156-146973984) | |
| 4-145, gnl|galGal2|chr14 (1588249-1588078) | |
| 4-145, gnl|hg17|chr1 (56116667-56116771) | |
| 4-145, gnl|hg17|chr16 (572871-573056) | |
| 4-145, gnl|Hg17|chr16 (572881-573022) | |
| 4-145, gnl|loxAfr1|scaffold_62206 (184-292) | |
| 4-145, gnl|loxAfr1|scaffold_62206 (341-158) | |
| 4-145, gnl|mm7|chr17 (24110860-24110962) | |
| 4-145, gnl|mm7|chr17 (24111010-24110824) | |
| 4-145, gnl|Mm7|chr17 (24110999-24110858) | |
| 4-145, gnl|monDom2|scaffold_49 (9429559-9429743) | |
| 4-145, gnl|panTro1|chr1 (54456155-54456259) | |
| 4-145, gnl|panTro1|chr18 (612747-612932) | |
| 4-145, gnl|rheMac2|chr1 (58807347-58807451) | |
| 4-145, gnl|rheMac2|chr20 (569449-569638) | |
| 4-145, gnl|rn3|chr10 (15189877-15189979) | |
| 4-145, gnl|rn3|chr10 (15190027-15189841) | |
| 4-145, gnl|tetNig1|chr3 (14057330-14057170) | |
| 4-145, gnl|xenTro1|scaffold_12 (3305235-3305427) | |
| 228-591, gnl|bosTau2|chr25 (1302789-1302423) | |
| 228-591, gnl|Hg17|chr16 (573481-573864) | |
| 758-895, gnl|bosTau2|chr25 (1302240-1302107) | |
| 758-895, gnl|canFam2|chr6 (43012270-43012123) | |
| 758-895, gnl|hg17|chr1 (56115210-56115316) | |
| 758-895, gnl|hg17|chr16 (573955-574117) | |
| 758-895, gnl|mm7|chr17 (24109877-24109662) | |
| 758-895, gnl|monDom2|scaffold_32 (12633656-12633777) | |
| 758-895, gnl|oryCun1|scaffold_210259 (48778-48677) | |
| 758-895, gnl|panTro1|chr1 (54454699-54454805) | |
| 758-895, gnl|panTro1|chr18 (613832-613993) | |
| 758-895, gnl|rheMac2|chr1 (58805886-58805997) | |
| 758-895, gnl|rheMac2|chr20 (570319-570480) | |
| 758-895, gnl|rn3|chr10 (15188490-15188274) | |
| 758-895, gnl|xenTro1|scaffold_2227 (15609-15788) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-145, gnl|bosTau2|chr25 (1303402-1303261) | |
| 4-145, gnl|canFam2|chr6 (43013024-43013126) | |
| 4-145, gnl|canFam2|chr6 (43013175-43012987) | |
| 4-145, gnl|danRer3|chr3 (19091927-19092035) | |
| 4-145, gnl|danRer3|chr3 (19171691-19171532) | |
| 4-145, gnl|echTel1|scaffold_262554 (13183-13291) | |
| 4-145, gnl|echTel1|scaffold_262554 (13340-13157) | |
| 4-145, gnl|fr1|chrUn (146974156-146973984) | |
| 4-145, gnl|galGal2|chr14 (1588249-1588078) | |
| 4-145, gnl|hg17|chr1 (56116667-56116771) | |
| 4-145, gnl|hg17|chr16 (572871-573056) | |
| 4-145, gnl|Hg17|chr16 (572881-573022) | |
| 4-145, gnl|loxAfr1|scaffold_62206 (184-292) | |
| 4-145, gnl|loxAfr1|scaffold_62206 (341-158) | |
| 4-145, gnl|mm7|chr17 (24110860-24110962) | |
| 4-145, gnl|mm7|chr17 (24111010-24110824) | |
| 4-145, gnl|Mm7|chr17 (24110999-24110858) | |
| 4-145, gnl|monDom2|scaffold_49 (9429559-9429743) | |
| 4-145, gnl|panTro1|chr1 (54456155-54456259) | |
| 4-145, gnl|panTro1|chr18 (612747-612932) | |
| 4-145, gnl|rheMac2|chr1 (58807347-58807451) | |
| 4-145, gnl|rheMac2|chr20 (569449-569638) | |
| 4-145, gnl|rn3|chr10 (15189877-15189979) | |
| 4-145, gnl|rn3|chr10 (15190027-15189841) | |
| 4-145, gnl|tetNig1|chr3 (14057330-14057170) | |
| 4-145, gnl|xenTro1|scaffold_12 (3305235-3305427) | |
| 228-591, gnl|bosTau2|chr25 (1302789-1302423) | |
| 228-591, gnl|Hg17|chr16 (573481-573864) | |
| 758-895, gnl|bosTau2|chr25 (1302240-1302107) | |
| 758-895, gnl|canFam2|chr6 (43012270-43012123) | |
| 758-895, gnl|hg17|chr1 (56115210-56115316) | |
| 758-895, gnl|hg17|chr16 (573955-574117) | |
| 758-895, gnl|mm7|chr17 (24109877-24109662) | |
| 758-895, gnl|monDom2|scaffold_32 (12633656-12633777) | |
| 758-895, gnl|oryCun1|scaffold_210259 (48778-48677) | |
| 758-895, gnl|panTro1|chr1 (54454699-54454805) | |
| 758-895, gnl|panTro1|chr18 (613832-613993) | |
| 758-895, gnl|rheMac2|chr1 (58805886-58805997) | |
| 758-895, gnl|rheMac2|chr20 (570319-570480) | |
| 758-895, gnl|rn3|chr10 (15188490-15188274) | |
| 758-895, gnl|xenTro1|scaffold_2227 (15609-15788) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) |