Non-Coding RNA Search

Ss1.1-Mixn-0035k10.5

Sequence:


               
               CGAATTTATCCATTAATACCAACCAAAACATCAACATTAAGTCAGAACCAATTTCACCTC
CCCGGGATCGAATGACCCCATCAGGCTTCCAGCAGCAGCAGCCACCTCCGCCATCACAGG
CCCCCCAGCCACAGCCCCCTCAGCCCCAGCCTCAGCCTCAGCCCCAGGCCCGGCAGGAAA
TGGGCCGCTCCCCTGTGGACAGTCTGAGCAGCTCCAGCAGCTCCTATGATGGCAGCGACC
GGGAGGATCCACGGGGTGACTTCCATTCTCCGGTTGTGCTCGGCCGACCCCCAAACACTG
AGGACAGAGAAAGCCCTTCAGTAAAGCGAATGAGGATGGACGCATGGGTGACCTAAGGCT
TCCAGGCTGGTGTTTGTACTTTGTGTTACTGCGGTGAACTGCCCTACATATCTAAATTGG
TAAATAAGGACATGAGTTAAATATATTTATATGTACATGCATACATATATATCCCTTTAC
ATATATATGTATGTGGGTGTGAGTGTGTATGTGTGGGTGTGTGTTGCATACACAGAATCA
GGCACTTACCTGCAAACTCTCATAGATGTGCAGTTGTGCATCCCATGGCAAACAGAGCAC
CCTGTAGGCAGAGTCTAGCCTGGCACTTCCTTGGACTACTTGTTTCATAAGATAACCAGT
TTTTGCAGAGAAACATGTACCCATATATATAATTCTCCCACACTAGCTTGCAGAAACCTA
GAGGGCCCCTACTTGTTTAATTTAACTGTGCGGTGACTGTAGTTACTTAAGAAAAATGCT
TTGTAGAACAGAGCAGTAGAAAAGCAGGAACCAAGAAAGCAATACTGTACATAAAATGTC
GTTTATATTAATTACCCAACCTGGCATGGGTCTCTATTGCAAAGAGGTGCATGGGAAAGG
GCTGTTGATATTAAAAAACAAAAAAACAAAACAAAAAAGCCCCACACATAACTGTTTTGC
ACGTGCAAAAATGTATTGGGTCAAAGAAGTGATCTTTAGCTAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATTTATCCATTAATACCAACCAAAACATCAACATTAAGTCAGAACCAATTTCACCTC
CCCGGGATCGAATGACCCCATCAGGCTTCCAGCAGCAGCAGCCACCTCCGCCATCACAGG
CCCCCCAGCCACAGCCCCCTCAGCCCCAGCCTCAGCCTCAGCCCCAGGCCCGGCAGGAAA
TGGGCCGCTCCCCTGTGGACAGTCTGAGCAGCTCCAGCAGCTCCTATGATGGCAGCGACC
GGGAGGATCCACGGGGTGACTTCCATTCTCCGGTTGTGCTCGGCCGACCCCCAAACACTG
AGGACAGAGAAAGCCCTTCAGTAAAGCGAATGAGGATGGACGCATGGGTGACCTAAGGCT
TCCAGGCTGGTGTTTGTACTTTGTGTTACTGCGGTGAACTGCCCTACATATCTAAATTGG
TAAATAAGGACATGAGTTAAATATATTTATATGTACATGCATACATATATATCCCTTTAC
ATATATATGTATGTGGGTGTGAGTGTGTATGTGTGGGTGTGTGTTGCATACACAGAATCA
GGCACTTACCTGCAAACTCTCATAGATGTGCAGTTGTGCATCCCATGGCAAACAGAGCAC
CCTGTAGGCAGAGTCTAGCCTGGCACTTCCTTGGACTACTTGTTTCATAAGATAACCAGT
TTTTGCAGAGAAACATGTACCCATATATATAATTCTCCCACACTAGCTTGCAGAAACCTA
GAGGGCCCCTACTTGTTTAATTTAACTGTGCGGTGACTGTAGTTACTTAAGAAAAATGCT
TTGTAGAACAGAGCAGTAGAAAAGCAGGAACCAAGAAAGCAATACTGTACATAAAATGTC
GTTTATATTAATTACCCAACCTGGCATGGGTCTCTATTGCAAAGAGGTGCATGGGAAAGG
GCTGTTGATATTAAAAAACAAAAAAACAAAACAAAAAAGCCCCACACATAACTGTTTTGC
ACGTGCAAAAATGTATTGGGTCAAAGAAGTGATCTTTAGCTAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6WZC9_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6WZC9_BOVIN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               42-158, - strand, RNAz p=0.997982
               

               
               398-628, - strand, RNAz p=0.976874
               

               
               863-1008, + strand, RNAz p=0.680732

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-158, - strand, RNAz p=0.997982
               

               
               398-628, - strand, RNAz p=0.976874
               

               
               863-1008, + strand, RNAz p=0.680732

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC053871, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC053871, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1008, gnl|bosTau2|chr21 (4703604-4704579)
               

               
               3-1008, gnl|Hg17|chr15 (98070146-98071141)
               

               
               3-1008, gnl|Mm7|chr7 (63096617-63095625)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1008, gnl|bosTau2|chr21 (4703604-4704579)
               

               
               3-1008, gnl|Hg17|chr15 (98070146-98071141)
               

               
               3-1008, gnl|Mm7|chr7 (63096617-63095625)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	42-158, - strand, RNAz p=0.997982
	398-628, - strand, RNAz p=0.976874
	863-1008, + strand, RNAz p=0.680732

	3-1008, gnl\|bosTau2\|chr21 (4703604-4704579)
	3-1008, gnl\|Hg17\|chr15 (98070146-98071141)
	3-1008, gnl\|Mm7\|chr7 (63096617-63095625)

	elu (0.385356)
	vin (0.332557)
	sme (0.305437)
	hea (0.204499)
	isp (0.150376)
	csk (0.140746)
	cly (0.120642)
	clu (0.119646)
	spc (0.113366)