Ss1.1-Mixn-0035l14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCGCCGTCTCGGTTCGGCTTGAGGGGGAGATCAAAAGAAGAGCTGTGTTTTCAGTCC GGAGGGGCACTGCCTCTAATCGTAGGAACTTCTCCTTGGTTCACTGAACTCTGATCCCGA CCTAGAGCCATAGCCATGGCAGCCAAGGGAGGCACCGTCAAAGCTGCTTCTGGCTTCAAC GCCGCCGAAGATGCCCAGACCCTGAGGAAGGCCATGAAAGGGCTCGGCACAGATGAAGAT GCCATCATCAGCGTCCTCGCCTACCGCAGCACCGCCCAGCGCCAGGAAATCAGGACAGCC TACAAGAGTACCATCGGCAGGGACCTGCTGGATGACCTGAAGTCGGAACTGAGTGGCAAC TTTGAACAGGTGATCTTGGGGATGATGACACCCACCGTGCTGTACGACGTGCAGGAGCTG CGAAGAGCCATGAAGGGAGCTGGCACGGATGAGGGCTGTCTGATTGAGATCCTGGCTTCC CGGACGCCCGAGGAGATTCGGCGCATAAACCAGACCTATCAGCTGCAATATGGGCGGAGC CTTGAAGATGACATTCGCTCTGACACGTCGTTCATGTTCCAGCGGGTGCTGGTGTCTCTG TCCGCTGGTGGCAGAGATGAAGGAAATTATCTGGATGATGCTCTCGTGAGACAGGATGCC CAGGACCTGTATGAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAATTTCTAACT GTGCTCTGTTCCCGGAATCGAAATCATTTGTTGCATGTGTTTGATGAATACAAAAGGATA TCACAGAAGGATATTGAACAGAGTATTAAATCTGAAACATCTGGTAGCTTTGAAGATGCT CTGTTGGCCATAGTAAAGTGCATGAGGAACAAATCTGCATATTTTGCTGAAAGGCTTTAT AAATCCATGAAGGGCTTGGGCACTGATGACAACACCCTCATCAGAGTGATGGTTTCTCGA GCGGAGATTGACATGATGGACATCCGGGCAAACTTCAAGAGACTCTATGGCAAGTCTCTC TACTCCTTCATCAAGGGTGACACATCGGGAGACTACAGGAAGGTACTACTTATTCTCTGC GGAGGAGATGATTGAAAAATAAAATCCAGAAAGGACAGGAGGATTCCCTACACCTTGGAT TTCTTTTAACTTCATTTTTCTGCACTGCTATTACTTCCAATTAAAACACCTACAGACGCC TCCTAGGACACAGACTGTATTATTATTCATCTGCAATTACTCATTATGATGCTTTAAAGC TGTACTTGCCTTTCAAAGCTTATAAAACCTAAAAGGAGATTTAAAATTAGAAATAAAAAG GTGCTCCTTGTTTTTAACAGATCTCTTCTTTGTGTTTCATAGGAATTGGAAAATATTAAA TTATTTCATGTTTTCTTTTGGGGAAAACTGTTGAAGTGGAAGGTTGGAAAGCTGTTCTTA AATCATTTTTCTTTCCCAATCCTGTTTTTAGGGAGTTTGTATTTCTTGATTTGAAATGGT GAGTATCTAGTTGGTAGGATTATCTATGTCATTTGCTACTTTACAGAATCATAGTTTGAA AGCATCTGCAAATCTCCTTTGTTTAGTTTTATCTAAAGTGCTTTTATCTTTATTAAGTTT GTCTCAGGAGACTTCTTTTAGCATATCTAATGTTAAGATCATTTAGTCTCTCCGGGTTGA AGAATACCAAACTCACCAACTCATCTGAACAAATTAAATTCTAAGTGTGGTTATACAGAT CATATATGTCTACTTACCAAACATAAATGCTGAACAGTCCACAATATTGTGATTAATAAT AACAAAATAAAATAATAATAATGGTCTTAATCCAGCTTGAAGAGGAATACAAAAAAATTT ACTTAGAGAAAATGTATTCTGGTGATGAGGTAGTGCAAAATCATTTTCAATTTTGTTGAT TTGTAGTAATTTACACTTGCACTGTGCCTTTCAACGCTAGAATTATTGTAAAGGTGTATT TGGACTTAATTAAAAATTTCAGTTTGTATACAACATGGAAAAATAATTTTAATAAAACAT TTAAAAATTTCAGTTTGTATACAACATGGAAAAATAATTTTAATAAAACATGGTATCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCGCCGTCTCGGTTCGGCTTGAGGGGGAGATCAAAAGAAGAGCTGTGTTTTCAGTCC GGAGGGGCACTGCCTCTAATCGTAGGAACTTCTCCTTGGTTCACTGAACTCTGATCCCGA CCTAGAGCCATAGCCATGGCAGCCAAGGGAGGCACCGTCAAAGCTGCTTCTGGCTTCAAC GCCGCCGAAGATGCCCAGACCCTGAGGAAGGCCATGAAAGGGCTCGGCACAGATGAAGAT GCCATCATCAGCGTCCTCGCCTACCGCAGCACCGCCCAGCGCCAGGAAATCAGGACAGCC TACAAGAGTACCATCGGCAGGGACCTGCTGGATGACCTGAAGTCGGAACTGAGTGGCAAC TTTGAACAGGTGATCTTGGGGATGATGACACCCACCGTGCTGTACGACGTGCAGGAGCTG CGAAGAGCCATGAAGGGAGCTGGCACGGATGAGGGCTGTCTGATTGAGATCCTGGCTTCC CGGACGCCCGAGGAGATTCGGCGCATAAACCAGACCTATCAGCTGCAATATGGGCGGAGC CTTGAAGATGACATTCGCTCTGACACGTCGTTCATGTTCCAGCGGGTGCTGGTGTCTCTG TCCGCTGGTGGCAGAGATGAAGGAAATTATCTGGATGATGCTCTCGTGAGACAGGATGCC CAGGACCTGTATGAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAATTTCTAACT GTGCTCTGTTCCCGGAATCGAAATCATTTGTTGCATGTGTTTGATGAATACAAAAGGATA TCACAGAAGGATATTGAACAGAGTATTAAATCTGAAACATCTGGTAGCTTTGAAGATGCT CTGTTGGCCATAGTAAAGTGCATGAGGAACAAATCTGCATATTTTGCTGAAAGGCTTTAT AAATCCATGAAGGGCTTGGGCACTGATGACAACACCCTCATCAGAGTGATGGTTTCTCGA GCGGAGATTGACATGATGGACATCCGGGCAAACTTCAAGAGACTCTATGGCAAGTCTCTC TACTCCTTCATCAAGGGTGACACATCGGGAGACTACAGGAAGGTACTACTTATTCTCTGC GGAGGAGATGATTGAAAAATAAAATCCAGAAAGGACAGGAGGATTCCCTACACCTTGGAT TTCTTTTAACTTCATTTTTCTGCACTGCTATTACTTCCAATTAAAACACCTACAGACGCC TCCTAGGACACAGACTGTATTATTATTCATCTGCAATTACTCATTATGATGCTTTAAAGC TGTACTTGCCTTTCAAAGCTTATAAAACCTAAAAGGAGATTTAAAATTAGAAATAAAAAG GTGCTCCTTGTTTTTAACAGATCTCTTCTTTGTGTTTCATAGGAATTGGAAAATATTAAA TTATTTCATGTTTTCTTTTGGGGAAAACTGTTGAAGTGGAAGGTTGGAAAGCTGTTCTTA AATCATTTTTCTTTCCCAATCCTGTTTTTAGGGAGTTTGTATTTCTTGATTTGAAATGGT GAGTATCTAGTTGGTAGGATTATCTATGTCATTTGCTACTTTACAGAATCATAGTTTGAA AGCATCTGCAAATCTCCTTTGTTTAGTTTTATCTAAAGTGCTTTTATCTTTATTAAGTTT GTCTCAGGAGACTTCTTTTAGCATATCTAATGTTAAGATCATTTAGTCTCTCCGGGTTGA AGAATACCAAACTCACCAACTCATCTGAACAAATTAAATTCTAAGTGTGGTTATACAGAT CATATATGTCTACTTACCAAACATAAATGCTGAACAGTCCACAATATTGTGATTAATAAT AACAAAATAAAATAATAATAATGGTCTTAATCCAGCTTGAAGAGGAATACAAAAAAATTT ACTTAGAGAAAATGTATTCTGGTGATGAGGTAGTGCAAAATCATTTTCAATTTTGTTGAT TTGTAGTAATTTACACTTGCACTGTGCCTTTCAACGCTAGAATTATTGTAAAGGTGTATT TGGACTTAATTAAAAATTTCAGTTTGTATACAACATGGAAAAATAATTTTAATAAAACAT TTAAAAATTTCAGTTTGTATACAACATGGAAAAATAATTTTAATAAAACATGGTATCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1352-1469, + strand, RNAz p=0.985616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1352-1469, + strand, RNAz p=0.985616 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 321-436, gnl|bosTau2|chr11 (48492027-48491912) | |
| 321-436, gnl|canFam2|chr10 (71602789-71602923) | |
| 321-436, gnl|danRer3|chr23 (54840847-54840718) | |
| 321-436, gnl|dasNov1|scaffold_19735 (15924-15790) | |
| 321-436, gnl|echTel1|scaffold_251459 (2184-2062) | |
| 321-436, gnl|fr1|chrUn (42089404-42089283) | |
| 321-436, gnl|hg17|chr2 (69945155-69945289) | |
| 321-436, gnl|Hg17|chr2 (69945167-69945282) | |
| 321-436, gnl|loxAfr1|scaffold_7401 (55789-55923) | |
| 321-436, gnl|mm7|chr6 (86830067-86829934) | |
| 321-436, gnl|Mm7|chr6 (86830053-86829938) | |
| 321-436, gnl|oryCun1|scaffold_204791 (54570-54437) | |
| 321-436, gnl|panTro1|chr12_random (25980451-25980585) | |
| 321-436, gnl|rheMac2|chr13 (70062979-70063113) | |
| 321-436, gnl|rn3|chr4 (121150754-121150625) | |
| 321-436, gnl|tetNig1|chr4 (1554507-1554637) | |
| 743-858, gnl|bosTau2|chr11 (48473937-48473823) | |
| 743-858, gnl|canFam2|chr10 (71613339-71613458) | |
| 743-858, gnl|danRer3|chrNA (225460575-225460693) | |
| 743-858, gnl|dasNov1|scaffold_19735 (3555-3436) | |
| 743-858, gnl|echTel1|scaffold_89096 (5707-5588) | |
| 743-858, gnl|fr1|chrUn (42087635-42087540) | |
| 743-858, gnl|hg17|chr2 (69957361-69957480) | |
| 743-858, gnl|Hg17|chr2 (69957368-69957482) | |
| 743-858, gnl|loxAfr1|scaffold_22366 (30175-30294) | |
| 743-858, gnl|mm7|chr6 (86819829-86819710) | |
| 743-858, gnl|Mm7|chr6 (86819820-86819706) | |
| 743-858, gnl|monDom2|scaffold_1 (96687521-96687648) | |
| 743-858, gnl|oryCun1|scaffold_204791 (39981-39862) | |
| 743-858, gnl|panTro1|chr12_random (25992719-25992838) | |
| 743-858, gnl|rheMac2|chr13 (70074951-70075070) | |
| 743-858, gnl|rn3|chr4 (121141671-121141552) | |
| 743-858, gnl|tetNig1|chr4 (1555782-1555885) | |
| 1025-2100, gnl|bosTau2|chr11 (48468567-48467490) | |
| 1025-2100, gnl|Hg17|chr2 (69964230-69965284) | |
| 1025-2100, gnl|Mm7|chr6 (86812917-86811933) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 321-436, gnl|bosTau2|chr11 (48492027-48491912) | |
| 321-436, gnl|canFam2|chr10 (71602789-71602923) | |
| 321-436, gnl|danRer3|chr23 (54840847-54840718) | |
| 321-436, gnl|dasNov1|scaffold_19735 (15924-15790) | |
| 321-436, gnl|echTel1|scaffold_251459 (2184-2062) | |
| 321-436, gnl|fr1|chrUn (42089404-42089283) | |
| 321-436, gnl|hg17|chr2 (69945155-69945289) | |
| 321-436, gnl|Hg17|chr2 (69945167-69945282) | |
| 321-436, gnl|loxAfr1|scaffold_7401 (55789-55923) | |
| 321-436, gnl|mm7|chr6 (86830067-86829934) | |
| 321-436, gnl|Mm7|chr6 (86830053-86829938) | |
| 321-436, gnl|oryCun1|scaffold_204791 (54570-54437) | |
| 321-436, gnl|panTro1|chr12_random (25980451-25980585) | |
| 321-436, gnl|rheMac2|chr13 (70062979-70063113) | |
| 321-436, gnl|rn3|chr4 (121150754-121150625) | |
| 321-436, gnl|tetNig1|chr4 (1554507-1554637) | |
| 743-858, gnl|bosTau2|chr11 (48473937-48473823) | |
| 743-858, gnl|canFam2|chr10 (71613339-71613458) | |
| 743-858, gnl|danRer3|chrNA (225460575-225460693) | |
| 743-858, gnl|dasNov1|scaffold_19735 (3555-3436) | |
| 743-858, gnl|echTel1|scaffold_89096 (5707-5588) | |
| 743-858, gnl|fr1|chrUn (42087635-42087540) | |
| 743-858, gnl|hg17|chr2 (69957361-69957480) | |
| 743-858, gnl|Hg17|chr2 (69957368-69957482) | |
| 743-858, gnl|loxAfr1|scaffold_22366 (30175-30294) | |
| 743-858, gnl|mm7|chr6 (86819829-86819710) | |
| 743-858, gnl|Mm7|chr6 (86819820-86819706) | |
| 743-858, gnl|monDom2|scaffold_1 (96687521-96687648) | |
| 743-858, gnl|oryCun1|scaffold_204791 (39981-39862) | |
| 743-858, gnl|panTro1|chr12_random (25992719-25992838) | |
| 743-858, gnl|rheMac2|chr13 (70074951-70075070) | |
| 743-858, gnl|rn3|chr4 (121141671-121141552) | |
| 743-858, gnl|tetNig1|chr4 (1555782-1555885) | |
| 1025-2100, gnl|bosTau2|chr11 (48468567-48467490) | |
| 1025-2100, gnl|Hg17|chr2 (69964230-69965284) | |
| 1025-2100, gnl|Mm7|chr6 (86812917-86811933) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| kid (1.29735) | |
| tra (0.861645) | |
| sin (0.69979) | |
| rec (0.692281) | |
| fat (0.58971) | |
| nje (0.49776) | |
| cje (0.495704) | |
| jej (0.494609) | |
| nco (0.485201) | |
| jca (0.45584) | |
| lin (0.436808) | |
| eep (0.367692) | |
| duo (0.345602) | |
| mga (0.32041) | |
| eje (0.296501) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cst (0.280073) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.29735) | |
| tra (0.861645) | |
| sin (0.69979) | |
| rec (0.692281) | |
| fat (0.58971) | |
| nje (0.49776) | |
| cje (0.495704) | |
| jej (0.494609) | |
| nco (0.485201) | |
| jca (0.45584) | |
| lin (0.436808) | |
| eep (0.367692) | |
| duo (0.345602) | |
| mga (0.32041) | |
| eje (0.296501) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cst (0.280073) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ldo (0.0970026) |