Non-Coding RNA Search

Ss1.1-Mixn-0035m14.5

Sequence:


               
               GGGAGGGGAGGCCGAGGAAAAGCCCGGCGCCTTCCCTGTTGACCAGCCTGGAGAAAGTCC
AATATAAGGCCCTGGTCAGATGCAAAAGAAGCTTTAAATTTCTCTCCTAATGTGGAAAAG
GGTAAGAATTTCAGTAGTTTAAAATAGGAGCGTTAACACCCGTGTTGCATGCATTCCACA
CATTACAATTTGTTTTCTATGATTTCTCACTGTTTGGCATTTGTTTAATAAAATGAAGGT
AAGACGATTTTAGTTTAGTTTTATAGCTACCTAACTTAGATTCAGTAAATTGTTTGTATA
ATTTTTAAGCTTAATTTGTATTACGTCACTGGTGACGGGGTAACAGACGCGTCTTGTTAG
TGTATCTGTTCTAATCAGTTGAACCTAATGCTGCTCTTGGGAGGATGCATTCGAGGGCGG
GCGCGTGGTGTTTTGAATACTTACCCCCGAGAGACACACTGGGCGAGTGTTCCGTGCTCT
GCGTGTTTTCACCGCATTGGACATTGAGTAGTCATTTGCATTAAGAGGCGCTTTAGGGCT
TTTTGTGACCATGTTTCCCTTTGTAGCAATAAACTGTTTTTTACAAAATTTCTCCCTGGA
TTAGCCATTTTAAATGAAACGGAATTCATCAATTAAAGGAGTATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGGAGGCCGAGGAAAAGCCCGGCGCCTTCCCTGTTGACCAGCCTGGAGAAAGTCC
AATATAAGGCCCTGGTCAGATGCAAAAGAAGCTTTAAATTTCTCTCCTAATGTGGAAAAG
GGTAAGAATTTCAGTAGTTTAAAATAGGAGCGTTAACACCCGTGTTGCATGCATTCCACA
CATTACAATTTGTTTTCTATGATTTCTCACTGTTTGGCATTTGTTTAATAAAATGAAGGT
AAGACGATTTTAGTTTAGTTTTATAGCTACCTAACTTAGATTCAGTAAATTGTTTGTATA
ATTTTTAAGCTTAATTTGTATTACGTCACTGGTGACGGGGTAACAGACGCGTCTTGTTAG
TGTATCTGTTCTAATCAGTTGAACCTAATGCTGCTCTTGGGAGGATGCATTCGAGGGCGG
GCGCGTGGTGTTTTGAATACTTACCCCCGAGAGACACACTGGGCGAGTGTTCCGTGCTCT
GCGTGTTTTCACCGCATTGGACATTGAGTAGTCATTTGCATTAAGAGGCGCTTTAGGGCT
TTTTGTGACCATGTTTCCCTTTGTAGCAATAAACTGTTTTTTACAAAATTTCTCCCTGGA
TTAGCCATTTTAAATGAAACGGAATTCATCAATTAAAGGAGTATATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               383-497, - strand, RNAz p=0.764889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-497, - strand, RNAz p=0.764889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr11 (24157637-24158225)
               

               
               1-592, gnl|Hg17|chr1 (90205221-90205805)
               

               
               1-592, gnl|Mm7|chr5 (105091942-105092528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr11 (24157637-24158225)
               

               
               1-592, gnl|Hg17|chr1 (90205221-90205805)
               

               
               1-592, gnl|Mm7|chr5 (105091942-105092528)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-592, gnl\|bosTau2\|chr11 (24157637-24158225)
	1-592, gnl\|Hg17\|chr1 (90205221-90205805)
	1-592, gnl\|Mm7\|chr5 (105091942-105092528)