Non-Coding RNA Search

Ss1.1-Mixn-0035m16.5

Sequence:


               
               ATCACTCCTAGTGTCCAGAGCTAGCATTCTGGAGACTAAAGATTGCACTTTTCCTAGTTT
TTCGTCCAAATGCAATCCCATTTCTGTGCCTCTTAGCATGCAGTTAGATTCCAACAAACA
AGATTCCTAAGGAATGACTATTAACTATAACGTGGTTACAGCTATCACACACAAACACAC
ACACACACACACACACACACACACACCCTTGTTATAATTGTACTTCAGAGATGCTGCGTG
TGATGCTGGCCCATGGCAGCCTGTCTGATGCTGTAACTCAGTTGGTGGAGGCCAGGCCTG
GAGCTGAAGTGTGGCCTGAACCTTCCCCATATCCATTCGTCACTTTAGAACTGTAAAGAC
GCCACTTTCTCCTCCTTTGCCCCTTAGTGGTATCTGAAACATGCTCCCCAAAGCAATTTC
CTAGTCACATTGTTAACCAGTACTCTACGAATAATTTTCAAGTGGGCATACAAAAACGTG
AAATGGGAAACCACCATTCATCCCATCCGCCCCCATAACCCCGCCGTCACCCCATCCTCC
ACCCCCATCCCAATGCAGGGCAACCTGCAGGTTACACACCCTCAGCCTCAGCCCTGGTCC
TTCCTGGCAGTGGGACAGGATCCAGACCTTTCCTTTAAACCTCAGAGGTAGCAGCAACCT
TTTTGGTGTTGATTTTAGCAAGTGTGTGTTTGCCAGTAGAGACCCATGTGTACTAACGTG
CCAATGAGTAAATGTTGACTAATTGCACATCTGCTTCCACTGTGTCCCCACGGGCGCTGT
GAGGCTCGTGAGCAGCCTCTTCCGGGGGAATGTAACGCTGCATTGACTACTGCTATCAGG
ATTGTGTTGTGTGGAATAATCATCTACATAAATTTTATATGCACAAGTAATTTCCCTTTT
ATATGTCAGGTAAATATTTGTAAAAGTTATACTCACACAAATGAAATTATTATAATGATT
ACTAATATATTTTTTCCATGTTTCATTGCCTGAATAAAAACTGTTTACCACTGTTAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCACTCCTAGTGTCCAGAGCTAGCATTCTGGAGACTAAAGATTGCACTTTTCCTAGTTT
TTCGTCCAAATGCAATCCCATTTCTGTGCCTCTTAGCATGCAGTTAGATTCCAACAAACA
AGATTCCTAAGGAATGACTATTAACTATAACGTGGTTACAGCTATCACACACAAACACAC
ACACACACACACACACACACACACACCCTTGTTATAATTGTACTTCAGAGATGCTGCGTG
TGATGCTGGCCCATGGCAGCCTGTCTGATGCTGTAACTCAGTTGGTGGAGGCCAGGCCTG
GAGCTGAAGTGTGGCCTGAACCTTCCCCATATCCATTCGTCACTTTAGAACTGTAAAGAC
GCCACTTTCTCCTCCTTTGCCCCTTAGTGGTATCTGAAACATGCTCCCCAAAGCAATTTC
CTAGTCACATTGTTAACCAGTACTCTACGAATAATTTTCAAGTGGGCATACAAAAACGTG
AAATGGGAAACCACCATTCATCCCATCCGCCCCCATAACCCCGCCGTCACCCCATCCTCC
ACCCCCATCCCAATGCAGGGCAACCTGCAGGTTACACACCCTCAGCCTCAGCCCTGGTCC
TTCCTGGCAGTGGGACAGGATCCAGACCTTTCCTTTAAACCTCAGAGGTAGCAGCAACCT
TTTTGGTGTTGATTTTAGCAAGTGTGTGTTTGCCAGTAGAGACCCATGTGTACTAACGTG
CCAATGAGTAAATGTTGACTAATTGCACATCTGCTTCCACTGTGTCCCCACGGGCGCTGT
GAGGCTCGTGAGCAGCCTCTTCCGGGGGAATGTAACGCTGCATTGACTACTGCTATCAGG
ATTGTGTTGTGTGGAATAATCATCTACATAAATTTTATATGCACAAGTAATTTCCCTTTT
ATATGTCAGGTAAATATTTGTAAAAGTTATACTCACACAAATGAAATTATTATAATGATT
ACTAATATATTTTTTCCATGTTTCATTGCCTGAATAAAAACTGTTTACCACTGTTAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               7-120, - strand, RNAz p=0.625615
               

               
               507-625, - strand, RNAz p=0.960611

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-120, - strand, RNAz p=0.625615
               

               
               507-625, - strand, RNAz p=0.960611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1016, gnl|bosTau2|chr27 (20910733-20909745)
               

               
               7-1016, gnl|Hg17|chr8 (38828773-38829703)
               

               
               7-1016, gnl|Mm7|chr8 (23909129-23908177)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1016, gnl|bosTau2|chr27 (20910733-20909745)
               

               
               7-1016, gnl|Hg17|chr8 (38828773-38829703)
               

               
               7-1016, gnl|Mm7|chr8 (23909129-23908177)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               sto (0.719295)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               spc (0.340097)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.719295)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               spc (0.340097)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	7-120, - strand, RNAz p=0.625615
	507-625, - strand, RNAz p=0.960611

	7-1016, gnl\|bosTau2\|chr27 (20910733-20909745)
	7-1016, gnl\|Hg17\|chr8 (38828773-38829703)
	7-1016, gnl\|Mm7\|chr8 (23909129-23908177)

	sto (0.719295)
	fhi (0.508733)
	amn (0.417711)
	spc (0.340097)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	cje (0.165235)
	liv (0.146284)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)