Non-Coding RNA Search

Ss1.1-Mixn-0035o14.5

Sequence:


               
               TGTTTTATAATAATCGTTTTTACATTTTCATATTAAAACATGAAATAAAATTAGGAATTC
AGTTCTGCAGCTGCCTTAGCTACATTTTAAGTGCTTAATAGGCATATGTGTTTAGAGGCT
TCTATATAGAACAGGGCAAATTCAGAGAAAATCCTATATCTGTCCAATTTGAATTTTTCC
CCTGCATCCTGTTATTCTCTAACTAGAGAAACAACTTTCTCCCAAGTCCCTTGGAGAGAT
TGTTTAGGCCAGGCCCATATAAGTGATAGGTACCGCAGAAGTTAACTTCCCTTATTTAAA
ATTTGAGGGAGCTTTTGGGAAGCTTTAATTTTCTGGATATTTTTAGTTCTCTACTTTGCT
AGTGTGCACTTAGCACAAAACATTTTTAGATTGCAACTTTGCTAGCATCAACTATTTTTA
ATGGGACTTTTTAATTTGAATGAACAGTCATTGAAAACTTCTGGGCAGAGAAATTCTAAA
AGGTAGTCAGGACTCACTTTTTTCACCTATCAGATTTGGTGAAGATGTGAGAAAAATAGA
ATTCTTCACTTTTTATGAACATGTATCCAAATAAATGTCATGCCCACATGTTCCCTGAGC
AATTCCATTTCTAGAAATTTATTCCTCAGCAATACTTGAACAAGTGGGCTGAGATGTATG
CAGAATGATGTTTACTGCAGCAAAATGCCCAGTGAAAACAACCTGCACATACTTTATCAG
TATGGGTCTCCATCCATGTAGGGGAATACCTTGCAGCTATTAAAGACAGATCTTGATGTA
CCGATTTTCACTATGAAAAAAGTTATAAAAAACATATATATGGTATCAGGCTTATTTTCT
AAATGTGCAAGAAACTTAACAGTGGGATGTGGAAAGTGGGTGATAAGAGGGAATTCCACT
TTCCACTTTATAACTTTCTGAATCATTTGCATTTTTTAACAATGAGCATGTATTGCTTTT
ATAATTAAAAATTAGCAACCCATTGTCAAGTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTATAATAATCGTTTTTACATTTTCATATTAAAACATGAAATAAAATTAGGAATTC
AGTTCTGCAGCTGCCTTAGCTACATTTTAAGTGCTTAATAGGCATATGTGTTTAGAGGCT
TCTATATAGAACAGGGCAAATTCAGAGAAAATCCTATATCTGTCCAATTTGAATTTTTCC
CCTGCATCCTGTTATTCTCTAACTAGAGAAACAACTTTCTCCCAAGTCCCTTGGAGAGAT
TGTTTAGGCCAGGCCCATATAAGTGATAGGTACCGCAGAAGTTAACTTCCCTTATTTAAA
ATTTGAGGGAGCTTTTGGGAAGCTTTAATTTTCTGGATATTTTTAGTTCTCTACTTTGCT
AGTGTGCACTTAGCACAAAACATTTTTAGATTGCAACTTTGCTAGCATCAACTATTTTTA
ATGGGACTTTTTAATTTGAATGAACAGTCATTGAAAACTTCTGGGCAGAGAAATTCTAAA
AGGTAGTCAGGACTCACTTTTTTCACCTATCAGATTTGGTGAAGATGTGAGAAAAATAGA
ATTCTTCACTTTTTATGAACATGTATCCAAATAAATGTCATGCCCACATGTTCCCTGAGC
AATTCCATTTCTAGAAATTTATTCCTCAGCAATACTTGAACAAGTGGGCTGAGATGTATG
CAGAATGATGTTTACTGCAGCAAAATGCCCAGTGAAAACAACCTGCACATACTTTATCAG
TATGGGTCTCCATCCATGTAGGGGAATACCTTGCAGCTATTAAAGACAGATCTTGATGTA
CCGATTTTCACTATGAAAAAAGTTATAAAAAACATATATATGGTATCAGGCTTATTTTCT
AAATGTGCAAGAAACTTAACAGTGGGATGTGGAAAGTGGGTGATAAGAGGGAATTCCACT
TTCCACTTTATAACTTTCTGAATCATTTGCATTTTTTAACAATGAGCATGTATTGCTTTT
ATAATTAAAAATTAGCAACCCATTGTCAAGTGTGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               157-274, - strand, RNAz p=0.60115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-274, - strand, RNAz p=0.60115

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               12-481, gnl|bosTau2|chr18 (16170112-16170597)
               

               
               12-481, gnl|Hg17|chr16 (45295384-45294931)
               


               
               565-837, gnl|bosTau2|chr18 (16170748-16171025)
               

               
               565-837, gnl|Hg17|chr16 (45294818-45294523)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-481, gnl|bosTau2|chr18 (16170112-16170597)
               

               
               12-481, gnl|Hg17|chr16 (45295384-45294931)
               


               
               565-837, gnl|bosTau2|chr18 (16170748-16171025)
               

               
               565-837, gnl|Hg17|chr16 (45294818-45294523)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	12-481, gnl\|bosTau2\|chr18 (16170112-16170597)
	12-481, gnl\|Hg17\|chr16 (45295384-45294931)

	565-837, gnl\|bosTau2\|chr18 (16170748-16171025)
	565-837, gnl\|Hg17\|chr16 (45294818-45294523)