Non-Coding RNA Search

Ss1.1-Mixn-0035o19.5

Sequence:


               
               GCTCCGGCGTCGTCACTGCAGCGGCTTGGGTGCTTGGGTTGCTGCTGTGGCGCCGGGACC
TTTCACATGCTGCGGGTGTGGCCAAAAAAAGAAAAAAGGAAGAAAGAAATGGCTCACTGG
GGCTGGCAGTTAATAAATGCCTGGAGCCCTTTGGAGAGCGATTCGAGGGGGGTGGTGCTG
CTGCTGCTGGAGGTGGGGACCGCCGCCCTGACCCTGTCTCTCCTTGAACCGACAGAGTGA
AGATACTTCCACGGGGACACCTGACCATGTACCTGCCCTGAGCGGCAAAGCCCAGCAGGC
GTCTCTGTCGTGGGCGGCACGGCCCGGTGCTTGTCTGGGGACCCCCCCACAGTTGGCAGG
CTCCCCCAGCAGCGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCAGTGGCCCC
CAGGACACCGGCGGCAGTAGCAGCAGCAGCAGCAACGCCAATGGCAGCAGTGGCAGCGGC
CCGAAGGCGGGCGTGGCAGACAAGGGCGCGGCGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCGGCGTCGTCACTGCAGCGGCTTGGGTGCTTGGGTTGCTGCTGTGGCGCCGGGACC
TTTCACATGCTGCGGGTGTGGCCAAAAAAAGAAAAAAGGAAGAAAGAAATGGCTCACTGG
GGCTGGCAGTTAATAAATGCCTGGAGCCCTTTGGAGAGCGATTCGAGGGGGGTGGTGCTG
CTGCTGCTGGAGGTGGGGACCGCCGCCCTGACCCTGTCTCTCCTTGAACCGACAGAGTGA
AGATACTTCCACGGGGACACCTGACCATGTACCTGCCCTGAGCGGCAAAGCCCAGCAGGC
GTCTCTGTCGTGGGCGGCACGGCCCGGTGCTTGTCTGGGGACCCCCCCACAGTTGGCAGG
CTCCCCCAGCAGCGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCAGTGGCCCC
CAGGACACCGGCGGCAGTAGCAGCAGCAGCAGCAACGCCAATGGCAGCAGTGGCAGCGGC
CCGAAGGCGGGCGTGGCAGACAAGGGCGCGGCGGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               105-516, gnl|bosTau2|chr7 (29963454-29963051)
               

               
               105-516, gnl|Hg17|chr5 (139039980-139040415)
               

               
               105-516, gnl|Mm7|chr18 (36234373-36234765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-516, gnl|bosTau2|chr7 (29963454-29963051)
               

               
               105-516, gnl|Hg17|chr5 (139039980-139040415)
               

               
               105-516, gnl|Mm7|chr18 (36234373-36234765)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               clu (0.119646)

	105-516, gnl\|bosTau2\|chr7 (29963454-29963051)
	105-516, gnl\|Hg17\|chr5 (139039980-139040415)
	105-516, gnl\|Mm7\|chr18 (36234373-36234765)