Non-Coding RNA Search

Ss1.1-Mixn-0035o23.5

Sequence:


               
               GCCAAGTCCAGCTCCCCAGCCCAGCGTCCTGCGTTTAAGGTCCGCGTTTTCTTCCGGGGA
CAATGAATCGTTCTTCCCAGGACACCGGCTCTCGCGGCCTTCCTGAAGAAAGAAAGCTTT
ACGTTGTGGATTCCATAAATGACCTAAACAGACTAAACCTCTGTCCTGCCGGATCGCAGC
ATCTGTTCCCTCTGGAGGAGAAAATCCCAGCCGACAGCAGTAACTCAGGAAATGGAAGCC
ACGGGCTGTTTTTGGTGGGGCTGATAATTGTGCTGATTGTCAGCCTGGCGCTGGTTTCCT
TCGTGATATTCCTAATAGTGCAAACTGGCAACAAGATGGAAGATGTGTCCAGAAGACTAG
CAGCCGAGGGAAAGGACATCGATGATCTTAAGCAAATGAACAGCATAATTGTAAAGCGAC
TCAACCAACTGGACTTGGAACGGAACTAAGGAAATGGGCTTCCGAGAGCAACTGCGGCAC
GTGAGCTTCGCGCTGTACTGGGAGTTTACAGGGATGAGAACCAACTAAGGGCATTTCTGC
AGGCAACTAAAGGCCAACCTCCTACCACAGGGATGGGAGCAACGCCGAGGCAAGCGGGGT
GGGGTGGGGACAGCTGCCTGAAAGGGGCTAAGGCTCGTTTTGCGTGAAGGTCCTTGGGCT
TTCATGGGGATAAGGGTGGCTGGCGCCGAGGAGAACCAACAGTAAGAAAGAAGGGGACTC
TGGCTCTGTACTTACAGCTTCTTTTACACACGGAGCTTTGTCACCAGAATAAGTTCACTG
TGGCCAGTGGACGTCATGGCACCTTATGTACCCTTATGAACTTCCACAGAAGCCTAAGGA
ATACACTGAATTTTTTGTGTTCAAAGGAATCAGGCGATAACTCTTTTCAATAAAAGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGTCCAGCTCCCCAGCCCAGCGTCCTGCGTTTAAGGTCCGCGTTTTCTTCCGGGGA
CAATGAATCGTTCTTCCCAGGACACCGGCTCTCGCGGCCTTCCTGAAGAAAGAAAGCTTT
ACGTTGTGGATTCCATAAATGACCTAAACAGACTAAACCTCTGTCCTGCCGGATCGCAGC
ATCTGTTCCCTCTGGAGGAGAAAATCCCAGCCGACAGCAGTAACTCAGGAAATGGAAGCC
ACGGGCTGTTTTTGGTGGGGCTGATAATTGTGCTGATTGTCAGCCTGGCGCTGGTTTCCT
TCGTGATATTCCTAATAGTGCAAACTGGCAACAAGATGGAAGATGTGTCCAGAAGACTAG
CAGCCGAGGGAAAGGACATCGATGATCTTAAGCAAATGAACAGCATAATTGTAAAGCGAC
TCAACCAACTGGACTTGGAACGGAACTAAGGAAATGGGCTTCCGAGAGCAACTGCGGCAC
GTGAGCTTCGCGCTGTACTGGGAGTTTACAGGGATGAGAACCAACTAAGGGCATTTCTGC
AGGCAACTAAAGGCCAACCTCCTACCACAGGGATGGGAGCAACGCCGAGGCAAGCGGGGT
GGGGTGGGGACAGCTGCCTGAAAGGGGCTAAGGCTCGTTTTGCGTGAAGGTCCTTGGGCT
TTCATGGGGATAAGGGTGGCTGGCGCCGAGGAGAACCAACAGTAAGAAAGAAGGGGACTC
TGGCTCTGTACTTACAGCTTCTTTTACACACGGAGCTTTGTCACCAGAATAAGTTCACTG
TGGCCAGTGGACGTCATGGCACCTTATGTACCCTTATGAACTTCCACAGAAGCCTAAGGA
ATACACTGAATTTTTTGTGTTCAAAGGAATCAGGCGATAACTCTTTTCAATAAAAGAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N8F7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N8F7_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-194, gnl|bosTau2|chr4 (27598603-27598414)
               

               
               4-194, gnl|Hg17|chr7 (111718764-111718954)
               

               
               4-194, gnl|Mm7|chr12 (38018731-38018543)
               


               
               317-898, gnl|bosTau2|chr4 (27592377-27591806)
               

               
               317-898, gnl|Hg17|chr7 (111723814-111724424)
               

               
               317-898, gnl|Mm7|chr12 (38010485-38009922)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-194, gnl|bosTau2|chr4 (27598603-27598414)
               

               
               4-194, gnl|Hg17|chr7 (111718764-111718954)
               

               
               4-194, gnl|Mm7|chr12 (38018731-38018543)
               


               
               317-898, gnl|bosTau2|chr4 (27592377-27591806)
               

               
               317-898, gnl|Hg17|chr7 (111723814-111724424)
               

               
               317-898, gnl|Mm7|chr12 (38010485-38009922)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ldo (0.291008)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.291008)
               

               
               che (0.136314)

	4-194, gnl\|bosTau2\|chr4 (27598603-27598414)
	4-194, gnl\|Hg17\|chr7 (111718764-111718954)
	4-194, gnl\|Mm7\|chr12 (38018731-38018543)

	317-898, gnl\|bosTau2\|chr4 (27592377-27591806)
	317-898, gnl\|Hg17\|chr7 (111723814-111724424)
	317-898, gnl\|Mm7\|chr12 (38010485-38009922)