Non-Coding RNA Search

Ss1.1-Mixn-0035p06.5

Sequence:


               
               GGACCATTAGGGATCAGAGGGAAAATTCGTTTGCAAATTCGTTCAGTTATTGATAGTGAT
TGGTGAAGAGAGGGATGCTAGTAGGGGTATCACGTTAAGCCCATGTTGACAAACCCTTTG
TAGAAACTCAGAGACTTCAGAGCCGTATCTTTGACAGTGGCTGGCAGACCTTTGCTCTGC
GTCCCTTCCCTCACATCTGAACCTCTCAGCCTCTTCTGAGTTGAAAAATACCAGACTGAT
TCAACTCTTACCCACTCCACACTGGGTCTGCCTATATGGACAAATGGCAGATATGACTTC
TGCATCATGTAGAGAGATTTTTTTCCCACCCCTCATCTCTTCCCAAACTCAGCTGTTGCC
TGTTCTTAGCTGGCTCTGGGAGCCTTCAAGGACTCCAGACCTGGTCCCTCTAGGCACAGC
GCATGTTTTCTTGAGCTGAGGGTTTCTGACACCCAAATTTGGTGGCCCACAGGAGGTCCT
GAGTCTTGGAACCTGTCCAAGCTCTGGCAGTGCGTTCCTCCTCACAGCTCTGTTGTGGCC
CAGGCTACAGAGGAAATCTGCAGGACACAAGGGGCCTTGTTGTGCTTCTCCCATAATGAA
ACTGGCTTGCTTTTTCAGCTGATAGGAACTTTAGACCAAGCTGGAACCTTCTGGAAAAGC
CTTGGGAGCAGGTCTGGTGGGCTTCTCCTGGGTCTCAGCCTCTGACCATCCCTGGCCTTG
GGGCAGCCCCAGGCAGAGCCTCCTGGATTCTTTTTTCTAAAATAGATAACACGTAGGAGG
TTGTGAACTGCTGGGGGCTCAAGCAAGTCATTTAACATCTCTGAGCTGTTTCCTTACCCA
TAAAAATGGAGTAGTGCTAGTACCTGCCTGATAGGGTTTCCACTTACACTGGTTCACTTA
GGGTAGCTGTTGGGATAACTTCAGCCCGTTTCTTATGTGCCCTGGCATTGTCCACTCTGG
AATTTATCTGTTATCACCTTCCTCCTTCCCCCACCAAGTGCCTCCTCCTGTAGATGAAGC
CTGTAAATAAACTGTGTACAGAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCATTAGGGATCAGAGGGAAAATTCGTTTGCAAATTCGTTCAGTTATTGATAGTGAT
TGGTGAAGAGAGGGATGCTAGTAGGGGTATCACGTTAAGCCCATGTTGACAAACCCTTTG
TAGAAACTCAGAGACTTCAGAGCCGTATCTTTGACAGTGGCTGGCAGACCTTTGCTCTGC
GTCCCTTCCCTCACATCTGAACCTCTCAGCCTCTTCTGAGTTGAAAAATACCAGACTGAT
TCAACTCTTACCCACTCCACACTGGGTCTGCCTATATGGACAAATGGCAGATATGACTTC
TGCATCATGTAGAGAGATTTTTTTCCCACCCCTCATCTCTTCCCAAACTCAGCTGTTGCC
TGTTCTTAGCTGGCTCTGGGAGCCTTCAAGGACTCCAGACCTGGTCCCTCTAGGCACAGC
GCATGTTTTCTTGAGCTGAGGGTTTCTGACACCCAAATTTGGTGGCCCACAGGAGGTCCT
GAGTCTTGGAACCTGTCCAAGCTCTGGCAGTGCGTTCCTCCTCACAGCTCTGTTGTGGCC
CAGGCTACAGAGGAAATCTGCAGGACACAAGGGGCCTTGTTGTGCTTCTCCCATAATGAA
ACTGGCTTGCTTTTTCAGCTGATAGGAACTTTAGACCAAGCTGGAACCTTCTGGAAAAGC
CTTGGGAGCAGGTCTGGTGGGCTTCTCCTGGGTCTCAGCCTCTGACCATCCCTGGCCTTG
GGGCAGCCCCAGGCAGAGCCTCCTGGATTCTTTTTTCTAAAATAGATAACACGTAGGAGG
TTGTGAACTGCTGGGGGCTCAAGCAAGTCATTTAACATCTCTGAGCTGTTTCCTTACCCA
TAAAAATGGAGTAGTGCTAGTACCTGCCTGATAGGGTTTCCACTTACACTGGTTCACTTA
GGGTAGCTGTTGGGATAACTTCAGCCCGTTTCTTATGTGCCCTGGCATTGTCCACTCTGG
AATTTATCTGTTATCACCTTCCTCCTTCCCCCACCAAGTGCCTCCTCCTGTAGATGAAGC
CTGTAAATAAACTGTGTACAGAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               286-787, gnl|bosTau2|chr2 (82786195-82786710)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               286-787, gnl|bosTau2|chr2 (82786195-82786710)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cga (0.558191)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               hlv (0.139256)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               hlv (0.139256)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	cga (0.558191)
	ssp (0.271039)
	nms (0.213858)
	sto (0.179824)
	eye (0.170503)
	hlv (0.139256)
	jej (0.0989218)
	ldo (0.0970026)