Non-Coding RNA Search

Ss1.1-Mixn-0035p16.5

Sequence:


               
               GGCATCTGAGGCCCCTCAGACCCCGAAGTGCAGGCTGGGAGGAGGTGAGATCCACTGGGC
AGGCTCTGACCTTCTTCCCGGGCAGCAGCGGCTTCGTCCCCGCGCCAGGATTCTTCCTTA
GCCCCGCGGCCCAGATGCAGCCCCAGGAGAGCAGCGTCCAGTACAGCCGGTGGGAGGACG
GCGGCAGCCGGGATGGAGTCAGCGTGGCCAGCAGGCCCGGCGCGGAGGAGGCCTCGGGCT
GGGCGAGGGTCTCCCGGAAGCTGTGCTCCGGCAAGCTGGGCATCTCCTTGAAGGTGCTGG
GCGGAGTGGCCCTCTTCTGGGCCGTGTTCATCCTGGGCTACATCACCGGCTACTACGTGC
ACAAGTGCAAATAAGCACTGCTCAGCACGCGCCCGGCCCGGCTCCGAGGGACGCGAGAGG
CCCTCCGTGTGCACGGAGCCCCATCTGCGCAGACCTCGTGTACACGCCGTCCCCCGTGTA
CACAGACCCCTCTCCCTGTTCACAGCCCCACCATGTACACAGACCCCCCCAACCTGCATC
CAAGGCTCCAGGGGCACCTGGGACACCAGCTGGCACAGTATCACAGGCACCTACATTACA
ACCAAACAGGGACACGGGTACACAAGGACACGCGGACACACGTACACGCCTGGCACCTAC
CACCACCCAGGGGCACCCACCACCACCCAGGGGCACCCGTGGCTGGGAGACGGGCCCAGC
CTGGGTGGGGCTACAGGACACACCCCCGTTGTACAAGGATGGCTCTGAGGGGGCTGCGTG
TCCCTCTGTCCATCCGCCCTGCCCAGGGGCTGAGTCCTTCCTGACCAAAATGGGGAGGGT
CTCTACCCCACCCCCGCTGCATCTTCCCTCCAGGATCCAGGAAGGTGGGCATATTCCCTG
GGGCTGCCCACCTGGCGGGGTGGGCCCTGCGGGCGCCCGGCCCCTCTACCCACACCCCGC
AGGAGGACCAGACCCAGTCATTAAACGGCTGTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATCTGAGGCCCCTCAGACCCCGAAGTGCAGGCTGGGAGGAGGTGAGATCCACTGGGC
AGGCTCTGACCTTCTTCCCGGGCAGCAGCGGCTTCGTCCCCGCGCCAGGATTCTTCCTTA
GCCCCGCGGCCCAGATGCAGCCCCAGGAGAGCAGCGTCCAGTACAGCCGGTGGGAGGACG
GCGGCAGCCGGGATGGAGTCAGCGTGGCCAGCAGGCCCGGCGCGGAGGAGGCCTCGGGCT
GGGCGAGGGTCTCCCGGAAGCTGTGCTCCGGCAAGCTGGGCATCTCCTTGAAGGTGCTGG
GCGGAGTGGCCCTCTTCTGGGCCGTGTTCATCCTGGGCTACATCACCGGCTACTACGTGC
ACAAGTGCAAATAAGCACTGCTCAGCACGCGCCCGGCCCGGCTCCGAGGGACGCGAGAGG
CCCTCCGTGTGCACGGAGCCCCATCTGCGCAGACCTCGTGTACACGCCGTCCCCCGTGTA
CACAGACCCCTCTCCCTGTTCACAGCCCCACCATGTACACAGACCCCCCCAACCTGCATC
CAAGGCTCCAGGGGCACCTGGGACACCAGCTGGCACAGTATCACAGGCACCTACATTACA
ACCAAACAGGGACACGGGTACACAAGGACACGCGGACACACGTACACGCCTGGCACCTAC
CACCACCCAGGGGCACCCACCACCACCCAGGGGCACCCGTGGCTGGGAGACGGGCCCAGC
CTGGGTGGGGCTACAGGACACACCCCCGTTGTACAAGGATGGCTCTGAGGGGGCTGCGTG
TCCCTCTGTCCATCCGCCCTGCCCAGGGGCTGAGTCCTTCCTGACCAAAATGGGGAGGGT
CTCTACCCCACCCCCGCTGCATCTTCCCTCCAGGATCCAGGAAGGTGGGCATATTCCCTG
GGGCTGCCCACCTGGCGGGGTGGGCCCTGCGGGCGCCCGGCCCCTCTACCCACACCCCGC
AGGAGGACCAGACCCAGTCATTAAACGGCTGTTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               433-561, - strand, RNAz p=0.999865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-561, - strand, RNAz p=0.999865

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               433-561, DB788110 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB788110.1|), blast E-value=0, identity=94.57% 
               

               
               433-561, DB788331 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB788331.1|), blast E-value=0, identity=94.57%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               433-561, DB788110 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB788110.1|), blast E-value=0, identity=94.57% 
               

               
               433-561, DB788331 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB788331.1|), blast E-value=0, identity=94.57%

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               246-672, gnl|bosTau2|chr16 (35390015-35389555)
               

               
               246-672, gnl|canFam2|chr5 (61285256-61285576)
               

               
               246-672, gnl|echTel1|scaffold_291199 (71631-71335)
               

               
               246-672, gnl|hg17|chr1 (3715515-3715810)
               

               
               246-672, gnl|loxAfr1|scaffold_124327 (1532-1182)
               

               
               246-672, gnl|mm7|chr4 (153012998-153012762)
               

               
               246-672, gnl|panTro1|chr1 (3569897-3570192)
               

               
               246-672, gnl|rheMac2|chr1 (6748695-6748987)
               

               
               246-672, gnl|rn3|chr5 (170820401-170820166)
               


               
               742-975, gnl|bosTau2|chr16 (35389383-35389140)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-672, gnl|bosTau2|chr16 (35390015-35389555)
               

               
               246-672, gnl|canFam2|chr5 (61285256-61285576)
               

               
               246-672, gnl|echTel1|scaffold_291199 (71631-71335)
               

               
               246-672, gnl|hg17|chr1 (3715515-3715810)
               

               
               246-672, gnl|loxAfr1|scaffold_124327 (1532-1182)
               

               
               246-672, gnl|mm7|chr4 (153012998-153012762)
               

               
               246-672, gnl|panTro1|chr1 (3569897-3570192)
               

               
               246-672, gnl|rheMac2|chr1 (6748695-6748987)
               

               
               246-672, gnl|rn3|chr5 (170820401-170820166)
               


               
               742-975, gnl|bosTau2|chr16 (35389383-35389140)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ute (0.132784)

	433-561, DB788110 full-length enriched swine cDNA library, adult adrenal (dbj\|DB788110.1\|), blast E-value=0, identity=94.57%
	433-561, DB788331 full-length enriched swine cDNA library, adult adrenal (dbj\|DB788331.1\|), blast E-value=0, identity=94.57%

	246-672, gnl\|bosTau2\|chr16 (35390015-35389555)
	246-672, gnl\|canFam2\|chr5 (61285256-61285576)
	246-672, gnl\|echTel1\|scaffold_291199 (71631-71335)
	246-672, gnl\|hg17\|chr1 (3715515-3715810)
	246-672, gnl\|loxAfr1\|scaffold_124327 (1532-1182)
	246-672, gnl\|mm7\|chr4 (153012998-153012762)
	246-672, gnl\|panTro1\|chr1 (3569897-3570192)
	246-672, gnl\|rheMac2\|chr1 (6748695-6748987)
	246-672, gnl\|rn3\|chr5 (170820401-170820166)

	742-975, gnl\|bosTau2\|chr16 (35389383-35389140)