Non-Coding RNA Search

Ss1.1-Mixn-0036a15.5

Sequence:


               
               ACCTCTGACCCTGGAGCTTCTACCAAAGACACGGCCGGGCCTGGACCCCACGGGGCTGGG
GAGGGCCATGTGCAATATTGGAGGGTCTTCTGGGGGCAATGGGAGGGCTGGGGCGTGGAA
CCCTTTCCCATGTACAGTATTTATGTTCTTTCTAGTGTGTACCTTCCCAAGCACTTATTT
ATGCAATGACCTGGGCAGGGAGTGGTTTGAGGAAATGACAGAAGGAAGAAAAACCCGACC
CTATGGCTGCCCTGGGAGCCCCCCTGGGACCCTCACCAGCCTTCCTGGGGGGTCCCGTCC
CCCTCTTGTTACGTACGCACACACTGCATGTTCAGGGCACTCAAACACTGCCTCTTAATG
TATTTTCCACGGCCTCGTCCCGACGATGCTGCCCTCCAGTGTCCAGAACCAAGGACCAAG
GCCTTTCAGGCTCTGGGAGCAAGGCGATGGCTGTGGGGACAGTGACTCTGTGGGGCCTCC
CTGGGCCTTGGCCTCTCGTTGCTCGCGGGCAGTGCCTTTAGTGGTTTCCGGATTTGGGAA
CACGGGGCCTCGGCCAGGGCTCTCTCCTGGCCTGAGCAGGGAAAGGGCCCTCCCTCTGCT
CCCAGTTGCCCCCCAGCCCCTGTGTCTCAGGCACTGGCACGTACGGTCACCTTGGGAGGG
TGGGCCTGGGGGCCCCTCACTCTGACCACTGAATCCCTGTCTTCACAGCTCCTCCTGTCA
AGGGCGGCCCTTGCAGGAAGGACGCCCACTGCTGAGGGGCCAGATGTGGCCTCTTTGACT
GGGGACCCCCCCCCCCGCGCCCCCCAGAATGCAGGAGCCCCTCTGACCCAACCCCGCGCT
TCAGCTGCAGCTCCGAAGGTCTGGTGTCAGATGGGGTTTGTTTGGTTCTGTTTTTGTTTG
GGTGGGTAGGTCATTGCGGTCTTAGGTTATGTTTCTCTTGCTACCAAAAAGTCATGTATT
AACTGTCCTTGGATGATGAAGTTTAAAGAGTCAATAAATAGAAGCACCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCTGACCCTGGAGCTTCTACCAAAGACACGGCCGGGCCTGGACCCCACGGGGCTGGG
GAGGGCCATGTGCAATATTGGAGGGTCTTCTGGGGGCAATGGGAGGGCTGGGGCGTGGAA
CCCTTTCCCATGTACAGTATTTATGTTCTTTCTAGTGTGTACCTTCCCAAGCACTTATTT
ATGCAATGACCTGGGCAGGGAGTGGTTTGAGGAAATGACAGAAGGAAGAAAAACCCGACC
CTATGGCTGCCCTGGGAGCCCCCCTGGGACCCTCACCAGCCTTCCTGGGGGGTCCCGTCC
CCCTCTTGTTACGTACGCACACACTGCATGTTCAGGGCACTCAAACACTGCCTCTTAATG
TATTTTCCACGGCCTCGTCCCGACGATGCTGCCCTCCAGTGTCCAGAACCAAGGACCAAG
GCCTTTCAGGCTCTGGGAGCAAGGCGATGGCTGTGGGGACAGTGACTCTGTGGGGCCTCC
CTGGGCCTTGGCCTCTCGTTGCTCGCGGGCAGTGCCTTTAGTGGTTTCCGGATTTGGGAA
CACGGGGCCTCGGCCAGGGCTCTCTCCTGGCCTGAGCAGGGAAAGGGCCCTCCCTCTGCT
CCCAGTTGCCCCCCAGCCCCTGTGTCTCAGGCACTGGCACGTACGGTCACCTTGGGAGGG
TGGGCCTGGGGGCCCCTCACTCTGACCACTGAATCCCTGTCTTCACAGCTCCTCCTGTCA
AGGGCGGCCCTTGCAGGAAGGACGCCCACTGCTGAGGGGCCAGATGTGGCCTCTTTGACT
GGGGACCCCCCCCCCCGCGCCCCCCAGAATGCAGGAGCCCCTCTGACCCAACCCCGCGCT
TCAGCTGCAGCTCCGAAGGTCTGGTGTCAGATGGGGTTTGTTTGGTTCTGTTTTTGTTTG
GGTGGGTAGGTCATTGCGGTCTTAGGTTATGTTTCTCTTGCTACCAAAAAGTCATGTATT
AACTGTCCTTGGATGATGAAGTTTAAAGAGTCAATAAATAGAAGCACCAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               320-431, - strand, RNAz p=0.534272
               

               
               503-645, - strand, RNAz p=0.94006
               

               
               685-842, - strand, RNAz p=0.996738

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-431, - strand, RNAz p=0.534272
               

               
               503-645, - strand, RNAz p=0.94006
               

               
               685-842, - strand, RNAz p=0.996738

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1014, gnl|bosTau2|chr15 (41718913-41719964)
               

               
               1-1014, gnl|Hg17|chr11 (72756729-72757779)
               

               
               1-1014, gnl|Mm7|chr7 (96919400-96918375)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1014, gnl|bosTau2|chr15 (41718913-41719964)
               

               
               1-1014, gnl|Hg17|chr11 (72756729-72757779)
               

               
               1-1014, gnl|Mm7|chr7 (96919400-96918375)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.33184)
               

               
               pla (0.267344)
               

               
               eye (0.170503)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               pla (0.267344)
               

               
               eye (0.170503)
               

               
               eje (0.0988338)

	320-431, - strand, RNAz p=0.534272
	503-645, - strand, RNAz p=0.94006
	685-842, - strand, RNAz p=0.996738

	1-1014, gnl\|bosTau2\|chr15 (41718913-41719964)
	1-1014, gnl\|Hg17\|chr11 (72756729-72757779)
	1-1014, gnl\|Mm7\|chr7 (96919400-96918375)