Non-Coding RNA Search

Ss1.1-Mixn-0036a18.5

Sequence:


               
               AGGAGGTGATGAGTCCATAGGCAAAGGAGATGGCCTAGACTTTCTATCACAGTTGAACTC
AGTGTTTCCTCTAAGAAAAAACCCAGCAGCTTCAAGCACCTCAGTATTGCATTCTAGTCC
TCTTAATGTCTTTATGGAGTCTCCAGGGAAAGAAGAAAATGAAAATCATGATCTGACAGC
TGAGTCTAAGAAAATGCATCTTGGAAAACAGGAACCTAAAGATTCCTTCAAACAGTTTGC
AAAGTTGATCCCCAGTGCTGAAATTGGACGTCTAAATACCTCTTCATCATCTAACCAAAC
AAGAAGTCCTGAGAAATTTGAAAAGCCAGAAAAAGAAATTGAAGCCCATGAACCTCCAGT
CAATGGATCCTCAACTCCAAATCCAAAGATAGCATCCTCTGTCACTGCTGGAGTGGCCAG
TTCACTATCAGAAAAAATAGCTGATACCATTGGAAATAATCGGCCAAATGCACCGTTGAC
ATCTGTTCAAATCCATTTTATTCAGAACATGATACAAGAAACATTGGATGACTTTAGAGA
AGCATGCCATAGGGACATTGTGAATTTGCAAGTGGAGATGATTAAACAGTTTCATATGCA
ATTGAATGAAATGCACTCTTTGTTGGAAAGATACTCAGTGAATGAAGGTTTAGTGGCGGA
AATTGAAAGACTACGAGAAGAAAACAAAAGACTACGGGCACACTTTTGAAATTTCTGTGA
ATACTTTAATGTTTTGTAATTTAGGAAGCTTTTGGCAACACAGAACTACATGGCATCAGT
ATTGTTTTCATGGCCTCTGGGGAAGAATTTTTTTTCAAGTAAAAGGGTGATGGGATTTTA
TACCAACCACTATTTCACTTTTTCTGACTGTCAAAAATATTTATATTTTTATATTAAATA
AACTACACAGTGTCATTTGCCTAAAAGGAAAGTCAACAGGATCTTTATTTTTGGAAAGCT
TTATTTAGCTATACACTAAGTGTCCTTTCTCATAATAAAAGAAAATTGTGCAAAGAAAAA
AAATACGTTATGTATGCTCTTAAATCATCTTTTTTAAGCAGATAATATTTTTGGTTGACA
ATTGCCTTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGTGATGAGTCCATAGGCAAAGGAGATGGCCTAGACTTTCTATCACAGTTGAACTC
AGTGTTTCCTCTAAGAAAAAACCCAGCAGCTTCAAGCACCTCAGTATTGCATTCTAGTCC
TCTTAATGTCTTTATGGAGTCTCCAGGGAAAGAAGAAAATGAAAATCATGATCTGACAGC
TGAGTCTAAGAAAATGCATCTTGGAAAACAGGAACCTAAAGATTCCTTCAAACAGTTTGC
AAAGTTGATCCCCAGTGCTGAAATTGGACGTCTAAATACCTCTTCATCATCTAACCAAAC
AAGAAGTCCTGAGAAATTTGAAAAGCCAGAAAAAGAAATTGAAGCCCATGAACCTCCAGT
CAATGGATCCTCAACTCCAAATCCAAAGATAGCATCCTCTGTCACTGCTGGAGTGGCCAG
TTCACTATCAGAAAAAATAGCTGATACCATTGGAAATAATCGGCCAAATGCACCGTTGAC
ATCTGTTCAAATCCATTTTATTCAGAACATGATACAAGAAACATTGGATGACTTTAGAGA
AGCATGCCATAGGGACATTGTGAATTTGCAAGTGGAGATGATTAAACAGTTTCATATGCA
ATTGAATGAAATGCACTCTTTGTTGGAAAGATACTCAGTGAATGAAGGTTTAGTGGCGGA
AATTGAAAGACTACGAGAAGAAAACAAAAGACTACGGGCACACTTTTGAAATTTCTGTGA
ATACTTTAATGTTTTGTAATTTAGGAAGCTTTTGGCAACACAGAACTACATGGCATCAGT
ATTGTTTTCATGGCCTCTGGGGAAGAATTTTTTTTCAAGTAAAAGGGTGATGGGATTTTA
TACCAACCACTATTTCACTTTTTCTGACTGTCAAAAATATTTATATTTTTATATTAAATA
AACTACACAGTGTCATTTGCCTAAAAGGAAAGTCAACAGGATCTTTATTTTTGGAAAGCT
TTATTTAGCTATACACTAAGTGTCCTTTCTCATAATAAAAGAAAATTGTGCAAAGAAAAA
AAATACGTTATGTATGCTCTTAAATCATCTTTTTTAAGCAGATAATATTTTTGGTTGACA
ATTGCCTTCTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866088|ref|XP_602633.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866088|ref|XP_602633.1|

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               32-235, gnl|bosTau2|chr5 (37293427-37293224)
               

               
               32-235, gnl|canFam2|chr15 (39587749-39587959)
               

               
               32-235, gnl|dasNov1|scaffold_24046 (18836-19034)
               

               
               32-235, gnl|galGal2|chr1 (42850750-42850949)
               

               
               32-235, gnl|hg17|chr12 (95839806-95840016)
               

               
               32-235, gnl|Hg17|chr12 (95839805-95840008)
               

               
               32-235, gnl|loxAfr1|scaffold_15677 (37535-37745)
               

               
               32-235, gnl|mm7|chr10 (92250886-92250676)
               

               
               32-235, gnl|Mm7|chr10 (92250885-92250682)
               

               
               32-235, gnl|monDom2|scaffold_34 (18858574-18858364)
               

               
               32-235, gnl|oryCun1|scaffold_180389 (11320-11110)
               

               
               32-235, gnl|panTro1|chr10 (98305191-98305401)
               

               
               32-235, gnl|rheMac2|chr11 (98162254-98162464)
               

               
               32-235, gnl|rn3|chr7 (29731459-29731252)
               


               
               378-537, gnl|bosTau2|chr5 (37290869-37290710)
               

               
               378-537, gnl|Hg17|chr12 (95841936-95842095)
               

               
               378-537, gnl|Mm7|chr10 (92248642-92248483)
               


               
               604-1092, gnl|bosTau2|chr5 (37281324-37280857)
               

               
               604-1092, gnl|Hg17|chr12 (95848194-95848665)
               

               
               604-1092, gnl|Mm7|chr10 (92245144-92244712)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-235, gnl|bosTau2|chr5 (37293427-37293224)
               

               
               32-235, gnl|canFam2|chr15 (39587749-39587959)
               

               
               32-235, gnl|dasNov1|scaffold_24046 (18836-19034)
               

               
               32-235, gnl|galGal2|chr1 (42850750-42850949)
               

               
               32-235, gnl|hg17|chr12 (95839806-95840016)
               

               
               32-235, gnl|Hg17|chr12 (95839805-95840008)
               

               
               32-235, gnl|loxAfr1|scaffold_15677 (37535-37745)
               

               
               32-235, gnl|mm7|chr10 (92250886-92250676)
               

               
               32-235, gnl|Mm7|chr10 (92250885-92250682)
               

               
               32-235, gnl|monDom2|scaffold_34 (18858574-18858364)
               

               
               32-235, gnl|oryCun1|scaffold_180389 (11320-11110)
               

               
               32-235, gnl|panTro1|chr10 (98305191-98305401)
               

               
               32-235, gnl|rheMac2|chr11 (98162254-98162464)
               

               
               32-235, gnl|rn3|chr7 (29731459-29731252)
               


               
               378-537, gnl|bosTau2|chr5 (37290869-37290710)
               

               
               378-537, gnl|Hg17|chr12 (95841936-95842095)
               

               
               378-537, gnl|Mm7|chr10 (92248642-92248483)
               


               
               604-1092, gnl|bosTau2|chr5 (37281324-37280857)
               

               
               604-1092, gnl|Hg17|chr12 (95848194-95848665)
               

               
               604-1092, gnl|Mm7|chr10 (92245144-92244712)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sag (0.182715)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

	32-235, gnl\|bosTau2\|chr5 (37293427-37293224)
	32-235, gnl\|canFam2\|chr15 (39587749-39587959)
	32-235, gnl\|dasNov1\|scaffold_24046 (18836-19034)
	32-235, gnl\|galGal2\|chr1 (42850750-42850949)
	32-235, gnl\|hg17\|chr12 (95839806-95840016)
	32-235, gnl\|Hg17\|chr12 (95839805-95840008)
	32-235, gnl\|loxAfr1\|scaffold_15677 (37535-37745)
	32-235, gnl\|mm7\|chr10 (92250886-92250676)
	32-235, gnl\|Mm7\|chr10 (92250885-92250682)
	32-235, gnl\|monDom2\|scaffold_34 (18858574-18858364)
	32-235, gnl\|oryCun1\|scaffold_180389 (11320-11110)
	32-235, gnl\|panTro1\|chr10 (98305191-98305401)
	32-235, gnl\|rheMac2\|chr11 (98162254-98162464)
	32-235, gnl\|rn3\|chr7 (29731459-29731252)

	378-537, gnl\|bosTau2\|chr5 (37290869-37290710)
	378-537, gnl\|Hg17\|chr12 (95841936-95842095)
	378-537, gnl\|Mm7\|chr10 (92248642-92248483)

	604-1092, gnl\|bosTau2\|chr5 (37281324-37280857)
	604-1092, gnl\|Hg17\|chr12 (95848194-95848665)
	604-1092, gnl\|Mm7\|chr10 (92245144-92244712)