Non-Coding RNA Search

Ss1.1-Mixn-0036b06.5

Sequence:


               
               CCCGGCGTCCCAGACAAGTTTTCAGATGTCATTCTGGCGACGATTTTGGCAACCAAGTCT
GAAATGTGCGGCCAGAAATTTGAACTGAAGATCGACAATGTGCGCTTTGTTGGGCACCCG
ACGCTGCTGCAGCACGCGCTGGGGCAGGTCTCCAAGACAGACCCATCCCCGAAGAGGGAG
GCTCCCACCATGATTCTCTTTAACGTGGTCTTTGCACTGAGGGCCAACGCCGACCCATCA
GTGATCAGCTGTCTGCACAACCTGTCCCGCCGCATCGCCACTGTGCTGCAGCACGAGGAG
CGCCGCTGCCAGTACCTCACGCGGGAGGCCAAGCTGATCCTGGCGCTGCAGGACGAGGTC
TCCGCCATGGCCGACGCTCCTGACGGGCCCCAGTCGCCGTTTCATCACATCCTGCCCAAG
TGCAAGCTGGCCAGGGACCTGAAGGACGCCTACGACAGCCTCTGCACGTCCGGTGTGGTT
CGGCTACACGTCAACAGCTGGCTGGAGGTGAGCTTCTGTCTGCCGCACAAGATCCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCGTCCCAGACAAGTTTTCAGATGTCATTCTGGCGACGATTTTGGCAACCAAGTCT
GAAATGTGCGGCCAGAAATTTGAACTGAAGATCGACAATGTGCGCTTTGTTGGGCACCCG
ACGCTGCTGCAGCACGCGCTGGGGCAGGTCTCCAAGACAGACCCATCCCCGAAGAGGGAG
GCTCCCACCATGATTCTCTTTAACGTGGTCTTTGCACTGAGGGCCAACGCCGACCCATCA
GTGATCAGCTGTCTGCACAACCTGTCCCGCCGCATCGCCACTGTGCTGCAGCACGAGGAG
CGCCGCTGCCAGTACCTCACGCGGGAGGCCAAGCTGATCCTGGCGCTGCAGGACGAGGTC
TCCGCCATGGCCGACGCTCCTGACGGGCCCCAGTCGCCGTTTCATCACATCCTGCCCAAG
TGCAAGCTGGCCAGGGACCTGAAGGACGCCTACGACAGCCTCTGCACGTCCGGTGTGGTT
CGGCTACACGTCAACAGCTGGCTGGAGGTGAGCTTCTGTCTGCCGCACAAGATCCACTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1817580|emb|CAB06556.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1817580|emb|CAB06556.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-376, - strand, RNAz p=0.545899

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-376, - strand, RNAz p=0.545899

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               18-149, gnl|bosTau2|chr25 (2588239-2588108)
               

               
               18-149, gnl|Hg17|chr16 (109254-109123)
               

               
               18-149, gnl|Mm7|chr11 (32207578-32207447)
               


               
               213-376, gnl|bosTau2|chr25 (2582310-2582147)
               

               
               213-376, gnl|canFam2|chrUn (46775082-46775254)
               

               
               213-376, gnl|danRer3|chr14 (51990650-51990830)
               

               
               213-376, gnl|dasNov1|scaffold_97460 (3546-3719)
               

               
               213-376, gnl|fr1|chrUn (67633703-67633866)
               

               
               213-376, gnl|galGal2|chrUn (12798382-12798548)
               

               
               213-376, gnl|hg17|chr16 (102609-102789)
               

               
               213-376, gnl|Hg17|chr16 (102784-102621)
               

               
               213-376, gnl|mm7|chr11 (32202123-32202303)
               

               
               213-376, gnl|Mm7|chr11 (32202295-32202135)
               

               
               213-376, gnl|monDom2|scaffold_49 (8123696-8123867)
               

               
               213-376, gnl|oryCun1|scaffold_165835 (403-583)
               

               
               213-376, gnl|panTro1|chr18 (108137-108317)
               

               
               213-376, gnl|rheMac2|chr20 (70309-70489)
               

               
               213-376, gnl|rn3|chr10 (15624834-15624665)
               

               
               213-376, gnl|tetNig1|chr3 (11758453-11758295)
               

               
               213-376, gnl|xenTro1|scaffold_1091 (27635-27802)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-149, gnl|bosTau2|chr25 (2588239-2588108)
               

               
               18-149, gnl|Hg17|chr16 (109254-109123)
               

               
               18-149, gnl|Mm7|chr11 (32207578-32207447)
               


               
               213-376, gnl|bosTau2|chr25 (2582310-2582147)
               

               
               213-376, gnl|canFam2|chrUn (46775082-46775254)
               

               
               213-376, gnl|danRer3|chr14 (51990650-51990830)
               

               
               213-376, gnl|dasNov1|scaffold_97460 (3546-3719)
               

               
               213-376, gnl|fr1|chrUn (67633703-67633866)
               

               
               213-376, gnl|galGal2|chrUn (12798382-12798548)
               

               
               213-376, gnl|hg17|chr16 (102609-102789)
               

               
               213-376, gnl|Hg17|chr16 (102784-102621)
               

               
               213-376, gnl|mm7|chr11 (32202123-32202303)
               

               
               213-376, gnl|Mm7|chr11 (32202295-32202135)
               

               
               213-376, gnl|monDom2|scaffold_49 (8123696-8123867)
               

               
               213-376, gnl|oryCun1|scaffold_165835 (403-583)
               

               
               213-376, gnl|panTro1|chr18 (108137-108317)
               

               
               213-376, gnl|rheMac2|chr20 (70309-70489)
               

               
               213-376, gnl|rn3|chr10 (15624834-15624665)
               

               
               213-376, gnl|tetNig1|chr3 (11758453-11758295)
               

               
               213-376, gnl|xenTro1|scaffold_1091 (27635-27802)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	18-149, gnl\|bosTau2\|chr25 (2588239-2588108)
	18-149, gnl\|Hg17\|chr16 (109254-109123)
	18-149, gnl\|Mm7\|chr11 (32207578-32207447)

	213-376, gnl\|bosTau2\|chr25 (2582310-2582147)
	213-376, gnl\|canFam2\|chrUn (46775082-46775254)
	213-376, gnl\|danRer3\|chr14 (51990650-51990830)
	213-376, gnl\|dasNov1\|scaffold_97460 (3546-3719)
	213-376, gnl\|fr1\|chrUn (67633703-67633866)
	213-376, gnl\|galGal2\|chrUn (12798382-12798548)
	213-376, gnl\|hg17\|chr16 (102609-102789)
	213-376, gnl\|Hg17\|chr16 (102784-102621)
	213-376, gnl\|mm7\|chr11 (32202123-32202303)
	213-376, gnl\|Mm7\|chr11 (32202295-32202135)
	213-376, gnl\|monDom2\|scaffold_49 (8123696-8123867)
	213-376, gnl\|oryCun1\|scaffold_165835 (403-583)
	213-376, gnl\|panTro1\|chr18 (108137-108317)
	213-376, gnl\|rheMac2\|chr20 (70309-70489)
	213-376, gnl\|rn3\|chr10 (15624834-15624665)
	213-376, gnl\|tetNig1\|chr3 (11758453-11758295)
	213-376, gnl\|xenTro1\|scaffold_1091 (27635-27802)