Non-Coding RNA Search

Ss1.1-Mixn-0036c22.5

Sequence:


               
               CGAGGGAAGAAGTTCTCCTACGTGGATGCTGATGGGTCCCCTGTGAGCGTGGTCCAGCTG
ACCTTCCTGAAGTTGCTGAGTGCCATCGCCCGCCAGAGTTTCACATACTCCTGCCAGAAC
TCAGCCGCCTGGCTGGATGAAGCTGCAGGCAACTATGGCCACTCCCTCCGTTTCCTGGGG
ACCAACGGGGAGGAGCTGTCTTTCAACCAGACCGCAGCAGCCACCATCACTGTCCCCTAT
GATGGCTGCCGGCTCCGCAAGGGACAGACGAAGACCCTCTTGGAGTTCAGCTCTTCCAGA
GTGGGGTTTCTGCCCCTGTGGGATGTGGCAGCCATTGACTTTGGCCAGACGAACCAGAAG
TTTGGGTTTGAACTGGGCCCTGTCTGCTTTAGCAGCTGAGAGCTTCAGGGGTGGGAGGGA
TCAATGAGGGAGCTCCAGACGGGGCACATTTGGTGCTGAGGCTTTGAAGCCACCATATTT
ATCATCTCCTATGACTGTGGAGCCGGGGGAGAATCTGCTCATCACAGTCAAACAGTATTC
CTTCTCTATTCCGGGGGTCTGGTGCTGGACTCCCCCTGGGCCAGGAGTCCAGTTTCCCTG
CACTGCACTGCATAACCGTAATCTGACTCTTTTCTCCTCTCCATGCTCAGCTCCCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGGAAGAAGTTCTCCTACGTGGATGCTGATGGGTCCCCTGTGAGCGTGGTCCAGCTG
ACCTTCCTGAAGTTGCTGAGTGCCATCGCCCGCCAGAGTTTCACATACTCCTGCCAGAAC
TCAGCCGCCTGGCTGGATGAAGCTGCAGGCAACTATGGCCACTCCCTCCGTTTCCTGGGG
ACCAACGGGGAGGAGCTGTCTTTCAACCAGACCGCAGCAGCCACCATCACTGTCCCCTAT
GATGGCTGCCGGCTCCGCAAGGGACAGACGAAGACCCTCTTGGAGTTCAGCTCTTCCAGA
GTGGGGTTTCTGCCCCTGTGGGATGTGGCAGCCATTGACTTTGGCCAGACGAACCAGAAG
TTTGGGTTTGAACTGGGCCCTGTCTGCTTTAGCAGCTGAGAGCTTCAGGGGTGGGAGGGA
TCAATGAGGGAGCTCCAGACGGGGCACATTTGGTGCTGAGGCTTTGAAGCCACCATATTT
ATCATCTCCTATGACTGTGGAGCCGGGGGAGAATCTGCTCATCACAGTCAAACAGTATTC
CTTCTCTATTCCGGGGGTCTGGTGCTGGACTCCCCCTGGGCCAGGAGTCCAGTTTCCCTG
CACTGCACTGCATAACCGTAATCTGACTCTTTTCTCCTCTCCATGCTCAGCTCCCTCCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               286-405, - strand, RNAz p=0.7843
               

               
               546-649, - strand, RNAz p=0.987062

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               286-405, - strand, RNAz p=0.7843
               

               
               546-649, - strand, RNAz p=0.987062

Aligned organism(s): 38 entry(ies)

More info

Aligned organism(s): 38 entry(ies)

Help | Less info


               
               11-200, gnl|bosTau2|chr11 (86733702-86733513)
               

               
               11-200, gnl|canFam2|chr20 (54077089-54076829)
               

               
               11-200, gnl|canFam2|chr9 (54188773-54189030)
               

               
               11-200, gnl|danRer3|chr19 (2004503-2004747)
               

               
               11-200, gnl|danRer3|chr19 (2004749-2004501)
               

               
               11-200, gnl|dasNov1|scaffold_109669 (928-1189)
               

               
               11-200, gnl|dasNov1|scaffold_280901 (569-830)
               

               
               11-200, gnl|echTel1|scaffold_235269 (3435-3195)
               

               
               11-200, gnl|echTel1|scaffold_235269 (3192-3439)
               

               
               11-200, gnl|fr1|chrUn (183220679-183220922)
               

               
               11-200, gnl|fr1|chrUn (30934582-30934330)
               

               
               11-200, gnl|galGal2|chr17 (2867692-2867947)
               

               
               11-200, gnl|galGal2|chr17 (2867956-2867706)
               

               
               11-200, gnl|hg17|chr19 (9932308-9932569)
               

               
               11-200, gnl|hg17|chr9 (134952750-134953007)
               

               
               11-200, gnl|Hg17|chr9 (134952760-134952949)
               

               
               11-200, gnl|loxAfr1|scaffold_44595 (9667-9930)
               

               
               11-200, gnl|loxAfr1|scaffold_44595 (9944-9686)
               

               
               11-200, gnl|mm7|chr2 (28039892-28040147)
               

               
               11-200, gnl|Mm7|chr2 (28039900-28040089)
               

               
               11-200, gnl|mm7|chr9 (20640843-20641105)
               

               
               11-200, gnl|monDom2|scaffold_106 (1568081-1568343)
               

               
               11-200, gnl|monDom2|scaffold_51 (12340101-12340364)
               

               
               11-200, gnl|oryCun1|scaffold_204586 (55374-55627)
               

               
               11-200, gnl|oryCun1|scaffold_204641 (61345-61084)
               

               
               11-200, gnl|panTro1|chr11 (119840700-119840957)
               

               
               11-200, gnl|panTro1|chr20 (10296816-10297073)
               

               
               11-200, gnl|rheMac2|chr15 (3462532-3462275)
               

               
               11-200, gnl|rheMac2|chr19 (9762408-9762669)
               

               
               11-200, gnl|rn3|chr3 (6966815-6967067)
               

               
               11-200, gnl|rn3|chr8 (19790058-19790320)
               

               
               11-200, gnl|tetNig1|chr18 (8737827-8738083)
               

               
               11-200, gnl|tetNig1|chrUn_random (2578707-2578448)
               

               
               11-200, gnl|xenTro1|scaffold_56 (2495563-2495323)
               

               
               11-200, gnl|xenTro1|scaffold_95 (1359744-1359488)
               


               
               247-649, gnl|bosTau2|chr7 (9800956-9801369)
               

               
               247-649, gnl|Hg17|chr19 (9932239-9931831)
               

               
               247-649, gnl|Mm7|chr9 (20640775-20640402)

Aligned organism(s): 38 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-200, gnl|bosTau2|chr11 (86733702-86733513)
               

               
               11-200, gnl|canFam2|chr20 (54077089-54076829)
               

               
               11-200, gnl|canFam2|chr9 (54188773-54189030)
               

               
               11-200, gnl|danRer3|chr19 (2004503-2004747)
               

               
               11-200, gnl|danRer3|chr19 (2004749-2004501)
               

               
               11-200, gnl|dasNov1|scaffold_109669 (928-1189)
               

               
               11-200, gnl|dasNov1|scaffold_280901 (569-830)
               

               
               11-200, gnl|echTel1|scaffold_235269 (3435-3195)
               

               
               11-200, gnl|echTel1|scaffold_235269 (3192-3439)
               

               
               11-200, gnl|fr1|chrUn (183220679-183220922)
               

               
               11-200, gnl|fr1|chrUn (30934582-30934330)
               

               
               11-200, gnl|galGal2|chr17 (2867692-2867947)
               

               
               11-200, gnl|galGal2|chr17 (2867956-2867706)
               

               
               11-200, gnl|hg17|chr19 (9932308-9932569)
               

               
               11-200, gnl|hg17|chr9 (134952750-134953007)
               

               
               11-200, gnl|Hg17|chr9 (134952760-134952949)
               

               
               11-200, gnl|loxAfr1|scaffold_44595 (9667-9930)
               

               
               11-200, gnl|loxAfr1|scaffold_44595 (9944-9686)
               

               
               11-200, gnl|mm7|chr2 (28039892-28040147)
               

               
               11-200, gnl|Mm7|chr2 (28039900-28040089)
               

               
               11-200, gnl|mm7|chr9 (20640843-20641105)
               

               
               11-200, gnl|monDom2|scaffold_106 (1568081-1568343)
               

               
               11-200, gnl|monDom2|scaffold_51 (12340101-12340364)
               

               
               11-200, gnl|oryCun1|scaffold_204586 (55374-55627)
               

               
               11-200, gnl|oryCun1|scaffold_204641 (61345-61084)
               

               
               11-200, gnl|panTro1|chr11 (119840700-119840957)
               

               
               11-200, gnl|panTro1|chr20 (10296816-10297073)
               

               
               11-200, gnl|rheMac2|chr15 (3462532-3462275)
               

               
               11-200, gnl|rheMac2|chr19 (9762408-9762669)
               

               
               11-200, gnl|rn3|chr3 (6966815-6967067)
               

               
               11-200, gnl|rn3|chr8 (19790058-19790320)
               

               
               11-200, gnl|tetNig1|chr18 (8737827-8738083)
               

               
               11-200, gnl|tetNig1|chrUn_random (2578707-2578448)
               

               
               11-200, gnl|xenTro1|scaffold_56 (2495563-2495323)
               

               
               11-200, gnl|xenTro1|scaffold_95 (1359744-1359488)
               


               
               247-649, gnl|bosTau2|chr7 (9800956-9801369)
               

               
               247-649, gnl|Hg17|chr19 (9932239-9931831)
               

               
               247-649, gnl|Mm7|chr9 (20640775-20640402)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	286-405, - strand, RNAz p=0.7843
	546-649, - strand, RNAz p=0.987062

	11-200, gnl\|bosTau2\|chr11 (86733702-86733513)
	11-200, gnl\|canFam2\|chr20 (54077089-54076829)
	11-200, gnl\|canFam2\|chr9 (54188773-54189030)
	11-200, gnl\|danRer3\|chr19 (2004503-2004747)
	11-200, gnl\|danRer3\|chr19 (2004749-2004501)
	11-200, gnl\|dasNov1\|scaffold_109669 (928-1189)
	11-200, gnl\|dasNov1\|scaffold_280901 (569-830)
	11-200, gnl\|echTel1\|scaffold_235269 (3435-3195)
	11-200, gnl\|echTel1\|scaffold_235269 (3192-3439)
	11-200, gnl\|fr1\|chrUn (183220679-183220922)
	11-200, gnl\|fr1\|chrUn (30934582-30934330)
	11-200, gnl\|galGal2\|chr17 (2867692-2867947)
	11-200, gnl\|galGal2\|chr17 (2867956-2867706)
	11-200, gnl\|hg17\|chr19 (9932308-9932569)
	11-200, gnl\|hg17\|chr9 (134952750-134953007)
	11-200, gnl\|Hg17\|chr9 (134952760-134952949)
	11-200, gnl\|loxAfr1\|scaffold_44595 (9667-9930)
	11-200, gnl\|loxAfr1\|scaffold_44595 (9944-9686)
	11-200, gnl\|mm7\|chr2 (28039892-28040147)
	11-200, gnl\|Mm7\|chr2 (28039900-28040089)
	11-200, gnl\|mm7\|chr9 (20640843-20641105)
	11-200, gnl\|monDom2\|scaffold_106 (1568081-1568343)
	11-200, gnl\|monDom2\|scaffold_51 (12340101-12340364)
	11-200, gnl\|oryCun1\|scaffold_204586 (55374-55627)
	11-200, gnl\|oryCun1\|scaffold_204641 (61345-61084)
	11-200, gnl\|panTro1\|chr11 (119840700-119840957)
	11-200, gnl\|panTro1\|chr20 (10296816-10297073)
	11-200, gnl\|rheMac2\|chr15 (3462532-3462275)
	11-200, gnl\|rheMac2\|chr19 (9762408-9762669)
	11-200, gnl\|rn3\|chr3 (6966815-6967067)
	11-200, gnl\|rn3\|chr8 (19790058-19790320)
	11-200, gnl\|tetNig1\|chr18 (8737827-8738083)
	11-200, gnl\|tetNig1\|chrUn_random (2578707-2578448)
	11-200, gnl\|xenTro1\|scaffold_56 (2495563-2495323)
	11-200, gnl\|xenTro1\|scaffold_95 (1359744-1359488)

	247-649, gnl\|bosTau2\|chr7 (9800956-9801369)
	247-649, gnl\|Hg17\|chr19 (9932239-9931831)
	247-649, gnl\|Mm7\|chr9 (20640775-20640402)