Non-Coding RNA Search

Ss1.1-Mixn-0036c23.5

Sequence:


               
               CACTTTCTCTCTTCCCAGATGATAACTTCTGGATGATCAGAGGATATGCTGTCTTGCCAG
ATTATCCCAAATCCATCCGTACATTAGGCTTTCCAAGACAGGTAAAGAAAATTGATGCAG
CTGTCTGTGACCACAACACAAGAAAAACCTACTTCTTTGTGGGTATTTGGTGCTGGAGGT
ATGATGAAGTGACCCAAACCATGGACAAAGGGTATCCACGGAGGGTGGTGAAATATTTCC
CAGGGATTGGTCTCCGAGTTGATGCCGCTTTCCAACACAAAGGATTCTTCTATTTCTTCC
GTAGATCAAAGCAATTTGAATATGACCCTAAGACAAAGAACATTACCCGAATGATGAAAA
CCAATACCTGGTTTCAGTGTAGAGAACCATTAAATTCATCATCTGATTTTACTATCAGTG
AGGAAAAAGAACATTCAGGAGGAGTGGAGTTGATTTATCACAAGAATTTAAACTTGCTTA
TTTTCAGTATTGTTCATGTGCTTAAAAAAAATCTATAGTTATCAATAAAGTCATAGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTCTCTCTTCCCAGATGATAACTTCTGGATGATCAGAGGATATGCTGTCTTGCCAG
ATTATCCCAAATCCATCCGTACATTAGGCTTTCCAAGACAGGTAAAGAAAATTGATGCAG
CTGTCTGTGACCACAACACAAGAAAAACCTACTTCTTTGTGGGTATTTGGTGCTGGAGGT
ATGATGAAGTGACCCAAACCATGGACAAAGGGTATCCACGGAGGGTGGTGAAATATTTCC
CAGGGATTGGTCTCCGAGTTGATGCCGCTTTCCAACACAAAGGATTCTTCTATTTCTTCC
GTAGATCAAAGCAATTTGAATATGACCCTAAGACAAAGAACATTACCCGAATGATGAAAA
CCAATACCTGGTTTCAGTGTAGAGAACCATTAAATTCATCATCTGATTTTACTATCAGTG
AGGAAAAAGAACATTCAGGAGGAGTGGAGTTGATTTATCACAAGAATTTAAACTTGCTTA
TTTTCAGTATTGTTCATGTGCTTAAAAAAAATCTATAGTTATCAATAAAGTCATAGACCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               7-181, gnl|bosTau2|chr15 (1203789-1203963)
               

               
               7-181, gnl|Hg17|chr11 (102070018-102069844)
               

               
               7-181, gnl|Mm7|chr9 (7577015-7577189)
               


               
               281-540, gnl|bosTau2|chr15 (1205504-1205759)
               

               
               281-540, gnl|Hg17|chr11 (102067953-102067695)
               

               
               281-540, gnl|Mm7|chr9 (7579279-7579528)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-181, gnl|bosTau2|chr15 (1203789-1203963)
               

               
               7-181, gnl|Hg17|chr11 (102070018-102069844)
               

               
               7-181, gnl|Mm7|chr9 (7577015-7577189)
               


               
               281-540, gnl|bosTau2|chr15 (1205504-1205759)
               

               
               281-540, gnl|Hg17|chr11 (102067953-102067695)
               

               
               281-540, gnl|Mm7|chr9 (7579279-7579528)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               csk (0.70373)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.70373)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               tra (0.123092)

	7-181, gnl\|bosTau2\|chr15 (1203789-1203963)
	7-181, gnl\|Hg17\|chr11 (102070018-102069844)
	7-181, gnl\|Mm7\|chr9 (7577015-7577189)

	281-540, gnl\|bosTau2\|chr15 (1205504-1205759)
	281-540, gnl\|Hg17\|chr11 (102067953-102067695)
	281-540, gnl\|Mm7\|chr9 (7579279-7579528)